Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
COL8A1P27658 VN1R85P-201ENST00000601587 426 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
COL8A1P27658 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.47□□□□□ -1.69
COL8A1P27658 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
COL8A1P27658 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.47□□□□□ -1.69
COL8A1P27658 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.47□□□□□ -1.69
COL8A1P27658 SRP72P2-201ENST00000344851 1979 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 AC099654.2-201ENST00000433031 1980 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.47□□□□□ -1.69
COL8A1P27658 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 AC008555.8-201ENST00000623602 2168 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
COL8A1P27658 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.47□□□□□ -1.69
COL8A1P27658 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.69
COL8A1P27658 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL8A1P27658 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
COL8A1P27658 AC007390.2-201ENST00000606229 3803 ntBASIC4.46□□□□□ -1.69
COL8A1P27658 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL8A1P27658 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL8A1P27658 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
COL8A1P27658 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
COL8A1P27658 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL8A1P27658 ANKRD30BP1-201ENST00000451052 2186 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.46□□□□□ -1.7
COL8A1P27658 RNU5A-1-201ENST00000362698 116 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 RN7SKP185-201ENST00000362813 326 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 RNA5SP90-201ENST00000364801 99 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 RNU1-64P-201ENST00000365443 163 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 RNU1-74P-201ENST00000384108 171 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 MIR10A-201ENST00000385043 110 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 HLFP1-201ENST00000402375 499 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 AC006461.1-201ENST00000412637 326 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 SSXP9-201ENST00000417503 292 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 MRPL48P1-201ENST00000445390 636 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.46□□□□□ -1.7
COL8A1P27658 AF186996.7-201ENST00000492781 209 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.46□□□□□ -1.7
COL8A1P27658 RNU6-772P-201ENST00000516042 105 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 RNU6-1095P-201ENST00000516148 108 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 RNU6-966P-201ENST00000516479 104 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 RNA5SP471-201ENST00000516971 106 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.46□□□□□ -1.7
COL8A1P27658 MIR3121-201ENST00000579680 77 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.46□□□□□ -1.7
COL8A1P27658 AL670379.3-201ENST00000605040 251 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 AC092628.2-201ENST00000622492 339 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 AL034408.1-202ENST00000636088 415 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.46□□□□□ -1.7
COL8A1P27658 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
COL8A1P27658 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
COL8A1P27658 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL8A1P27658 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.46□□□□□ -1.7
COL8A1P27658 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL8A1P27658 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
COL8A1P27658 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.46□□□□□ -1.7
COL8A1P27658 MTND5P35-201ENST00000557537 1720 ntBASIC4.46□□□□□ -1.7
COL8A1P27658 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.46□□□□□ -1.7
COL8A1P27658 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL8A1P27658 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
COL8A1P27658 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL8A1P27658 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.46□□□□□ -1.7
COL8A1P27658 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL8A1P27658 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
COL8A1P27658 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
COL8A1P27658 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.45□□□□□ -1.7
COL8A1P27658 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
COL8A1P27658 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL8A1P27658 RNA5SP447-201ENST00000363749 119 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 U8.6-201ENST00000364939 135 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 Y_RNA.319-201ENST00000365138 92 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 SNORA70.6-201ENST00000383934 134 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 RNA5SP171-201ENST00000391071 115 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 EIF1AXP1-201ENST00000419267 435 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.45□□□□□ -1.7
COL8A1P27658 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.45□□□□□ -1.7
COL8A1P27658 AL031737.1-201ENST00000450125 223 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.45□□□□□ -1.7
COL8A1P27658 AURKAPS2-201ENST00000454983 333 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 snoU13.22-201ENST00000459428 104 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 AC091167.1-201ENST00000492017 396 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.45□□□□□ -1.7
COL8A1P27658 BTF3L4P4-201ENST00000506381 449 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 SNORA31.22-201ENST00000517204 135 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.45□□□□□ -1.7
COL8A1P27658 AL358913.1-201ENST00000554342 121 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.45□□□□□ -1.7
COL8A1P27658 MIR3939-201ENST00000582614 106 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 AC006272.2-201ENST00000594725 163 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms