Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AL031667.3-201ENST00000620124 655 ntBASIC2.19□□□□□ -2.06
CLDN9O95484 AC025034.2-201ENST00000623264 286 ntBASIC2.19□□□□□ -2.06
CLDN9O95484 AL160394.1-201ENST00000624765 724 ntBASIC2.19□□□□□ -2.06
CLDN9O95484 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.19□□□□□ -2.06
CLDN9O95484 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
CLDN9O95484 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.19□□□□□ -2.06
CLDN9O95484 AC104454.1-201ENST00000421341 1401 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 MTND5P30-201ENST00000452896 1731 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 RNU1-52P-201ENST00000384190 164 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 SNORA80E-201ENST00000384744 137 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 RNU6-817P-201ENST00000391083 104 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 RPS20P2-201ENST00000402520 389 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 RNU6-920P-201ENST00000410926 92 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 CYCSP48-201ENST00000417124 323 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.18□□□□□ -2.06
CLDN9O95484 ISCA1P6-201ENST00000427740 390 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 RPL30P4-201ENST00000429309 333 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.18□□□□□ -2.06
CLDN9O95484 MICF-203ENST00000432679 129 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.18□□□□□ -2.06
CLDN9O95484 AL354941.1-201ENST00000438600 464 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC011753.1-201ENST00000451001 220 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC092001.1-201ENST00000453012 261 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.18□□□□□ -2.06
CLDN9O95484 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.18□□□□□ -2.06
CLDN9O95484 AP001324.2-201ENST00000461163 319 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.18□□□□□ -2.06
CLDN9O95484 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.18□□□□□ -2.06
CLDN9O95484 TPT1P8-201ENST00000510120 555 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 HMGB3P3-201ENST00000510526 400 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 RNU6-581P-201ENST00000516214 105 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.18□□□□□ -2.06
CLDN9O95484 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.18□□□□□ -2.06
CLDN9O95484 AC123904.2-201ENST00000548059 300 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 ARL2BPP2-201ENST00000550907 489 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CLDN9O95484 RPS3AP4-201ENST00000555161 764 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL354943.1-201ENST00000572103 781 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 MIR5571-201ENST00000577998 113 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.18□□□□□ -2.06
CLDN9O95484 AC245884.10-201ENST00000597355 337 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 BNIP3P9-201ENST00000603714 553 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL670379.6-201ENST00000603753 252 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL670379.11-201ENST00000604059 253 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC008162.1-201ENST00000604718 254 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL670379.1-201ENST00000604752 252 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AP000860.1-201ENST00000605250 559 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL670379.5-201ENST00000605253 252 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL670379.12-201ENST00000605291 253 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL670379.8-201ENST00000605353 252 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AL670379.7-201ENST00000605823 252 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC107952.2-201ENST00000606048 486 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 AC005332.10-201ENST00000612725 619 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 MIR6895-201ENST00000613497 78 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.18□□□□□ -2.06
CLDN9O95484 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
CLDN9O95484 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.18□□□□□ -2.06
CLDN9O95484 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.18□□□□□ -2.06
CLDN9O95484 AC005336.3-201ENST00000623833 2679 ntBASIC2.18□□□□□ -2.06
CLDN9O95484 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CLDN9O95484 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.18□□□□□ -2.06
CLDN9O95484 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.17□□□□□ -2.06
CLDN9O95484 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.17□□□□□ -2.06
CLDN9O95484 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CLDN9O95484 AL139276.1-201ENST00000311910 1001 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CLDN9O95484 Y_RNA.97-201ENST00000363094 102 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 RNU2-36P-201ENST00000410361 191 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 RNU2-62P-201ENST00000410868 191 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.17□□□□□ -2.06
CLDN9O95484 DYNLL1P5-201ENST00000467158 270 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 MTND1P3-201ENST00000484956 952 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 RPL39P36-201ENST00000490784 156 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.17□□□□□ -2.06
CLDN9O95484 AC020699.1-201ENST00000505161 445 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CLDN9O95484 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.17□□□□□ -2.06
CLDN9O95484 RNU6-1183P-201ENST00000517054 60 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.17□□□□□ -2.06
CLDN9O95484 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.17□□□□□ -2.06
CLDN9O95484 PRELID2P1-201ENST00000552837 301 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 AC121758.2-201ENST00000553271 193 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 AC090888.2-201ENST00000559765 1144 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.17□□□□□ -2.06
CLDN9O95484 AP001981.2-201ENST00000603241 418 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 AC069294.1-201ENST00000608397 350 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.17□□□□□ -2.06
CLDN9O95484 AL512643.1-201ENST00000635735 524 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 Z99571.1-201ENST00000636677 394 ntBASIC2.17□□□□□ -2.06
CLDN9O95484 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CLDN9O95484 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CLDN9O95484 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
CLDN9O95484 AL359854.1-201ENST00000614203 1594 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AL391994.1-201ENST00000254724 282 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 RNU6-188P-201ENST00000364207 107 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 RNA5SP125-201ENST00000364843 120 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
CLDN9O95484 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CLDN9O95484 RNU6-809P-201ENST00000384461 107 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 SNORA67.4-201ENST00000384688 142 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms