Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 HMGB1P27-201ENST00000431429 603 ntBASIC2.5□□□□□ -2.01
SDC3O75056 GPM6BP2-201ENST00000432046 144 ntBASIC2.5□□□□□ -2.01
SDC3O75056 CETN4P-201ENST00000432407 469 ntBASIC2.5□□□□□ -2.01
SDC3O75056 AL445687.1-201ENST00000439946 251 ntBASIC2.5□□□□□ -2.01
SDC3O75056 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.5□□□□□ -2.01
SDC3O75056 AC010095.1-201ENST00000443543 144 ntBASIC2.5□□□□□ -2.01
SDC3O75056 TAF9P1-201ENST00000445421 515 ntBASIC2.5□□□□□ -2.01
SDC3O75056 GPM6BP1-201ENST00000446387 144 ntBASIC2.5□□□□□ -2.01
SDC3O75056 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.5□□□□□ -2.01
SDC3O75056 TAF9P2-201ENST00000454958 515 ntBASIC2.5□□□□□ -2.01
SDC3O75056 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.5□□□□□ -2.01
SDC3O75056 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.5□□□□□ -2.01
SDC3O75056 RPS27AP10-201ENST00000496103 208 ntBASIC2.5□□□□□ -2.01
SDC3O75056 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.5□□□□□ -2.01
SDC3O75056 SNORA31.18-201ENST00000517043 134 ntBASIC2.5□□□□□ -2.01
SDC3O75056 RNA5SP165-201ENST00000517142 115 ntBASIC2.5□□□□□ -2.01
SDC3O75056 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.5□□□□□ -2.01
SDC3O75056 AP003181.2-201ENST00000528941 181 ntBASIC2.5□□□□□ -2.01
SDC3O75056 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.5□□□□□ -2.01
SDC3O75056 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.5□□□□□ -2.01
SDC3O75056 AP002770.2-201ENST00000543613 532 ntBASIC2.5□□□□□ -2.01
SDC3O75056 NACAP3-201ENST00000552100 481 ntBASIC2.5□□□□□ -2.01
SDC3O75056 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.5□□□□□ -2.01
SDC3O75056 AC109446.2-201ENST00000567872 497 ntBASIC2.5□□□□□ -2.01
SDC3O75056 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.5□□□□□ -2.01
SDC3O75056 CTSLP2-204ENST00000629029 392 ntBASIC2.5□□□□□ -2.01
SDC3O75056 UBE2L2-201ENST00000254302 429 ntBASIC2.49□□□□□ -2.01
SDC3O75056 HSPE1P11-201ENST00000339579 310 ntBASIC2.49□□□□□ -2.01
SDC3O75056 RNU6-960P-201ENST00000364056 120 ntBASIC2.49□□□□□ -2.01
SDC3O75056 RN7SKP226-201ENST00000364912 300 ntBASIC2.49□□□□□ -2.01
SDC3O75056 MIR518C-201ENST00000384822 101 ntBASIC2.49□□□□□ -2.01
SDC3O75056 MIR27B-201ENST00000385129 97 ntBASIC2.49□□□□□ -2.01
SDC3O75056 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
SDC3O75056 RNU6-750P-201ENST00000390946 107 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AL021407.1-201ENST00000404531 386 ntBASIC2.49□□□□□ -2.01
SDC3O75056 NDUFS5P4-201ENST00000412983 318 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AC137499.1-201ENST00000427602 88 ntBASIC2.49□□□□□ -2.01
SDC3O75056 PGBD4P3-201ENST00000440731 581 ntBASIC2.49□□□□□ -2.01
SDC3O75056 NEFMP1-201ENST00000443423 1006 ntBASIC2.49□□□□□ -2.01
SDC3O75056 CACYBPP2-201ENST00000453625 678 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AC027673.1-201ENST00000456245 405 ntBASIC2.49□□□□□ -2.01
SDC3O75056 EIF4EP3-201ENST00000498782 656 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.49□□□□□ -2.01
SDC3O75056 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.49□□□□□ -2.01
SDC3O75056 RNU6-1092P-201ENST00000516955 87 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.49□□□□□ -2.01
SDC3O75056 RPL21P5-201ENST00000554662 472 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AC007363.1-201ENST00000604736 620 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AL451064.1-201ENST00000607718 471 ntBASIC2.49□□□□□ -2.01
SDC3O75056 U4.3-201ENST00000621047 82 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.49□□□□□ -2.01
SDC3O75056 MIR3199-2-201ENST00000636243 86 ntBASIC2.49□□□□□ -2.01
SDC3O75056 AC110491.1-201ENST00000562191 2010 ntBASIC2.49□□□□□ -2.01
SDC3O75056 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.49□□□□□ -2.01
SDC3O75056 RNU6-778P-201ENST00000363269 103 ntBASIC2.48□□□□□ -2.01
SDC3O75056 RNU6-512P-201ENST00000364438 103 ntBASIC2.48□□□□□ -2.01
SDC3O75056 RNU1-73P-201ENST00000383971 164 ntBASIC2.48□□□□□ -2.01
SDC3O75056 MIR592-201ENST00000384959 97 ntBASIC2.48□□□□□ -2.01
SDC3O75056 MT-TH-201ENST00000387441 69 ntBASIC2.48□□□□□ -2.01
SDC3O75056 RNA5SP210-201ENST00000391034 120 ntBASIC2.48□□□□□ -2.01
SDC3O75056 MRPL42P2-201ENST00000403169 426 ntBASIC2.48□□□□□ -2.01
SDC3O75056 RPS15AP12-201ENST00000419498 388 ntBASIC2.48□□□□□ -2.01
SDC3O75056 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 AC011816.1-201ENST00000441346 546 ntBASIC2.48□□□□□ -2.01
SDC3O75056 AP000852.1-201ENST00000472460 573 ntBASIC2.48□□□□□ -2.01
SDC3O75056 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC3O75056 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 NDUFB4P2-201ENST00000509515 391 ntBASIC2.48□□□□□ -2.01
SDC3O75056 TBCAP3-201ENST00000512475 312 ntBASIC2.48□□□□□ -2.01
SDC3O75056 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC3O75056 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 RNA5SP337-201ENST00000517007 109 ntBASIC2.48□□□□□ -2.01
SDC3O75056 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.48□□□□□ -2.01
SDC3O75056 CKS1BP7-201ENST00000522230 235 ntBASIC2.48□□□□□ -2.01
SDC3O75056 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.48□□□□□ -2.01
SDC3O75056 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC3O75056 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC3O75056 AC009977.1-201ENST00000586015 570 ntBASIC2.48□□□□□ -2.01
SDC3O75056 HMGN1P30-201ENST00000589286 268 ntBASIC2.48□□□□□ -2.01
SDC3O75056 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.48□□□□□ -2.01
SDC3O75056 AL356575.1-201ENST00000603008 283 ntBASIC2.48□□□□□ -2.01
SDC3O75056 AC174048.1-201ENST00000603389 144 ntBASIC2.48□□□□□ -2.01
SDC3O75056 AL365204.3-201ENST00000612448 685 ntBASIC2.48□□□□□ -2.01
SDC3O75056 DUSP12P1-201ENST00000612874 516 ntBASIC2.48□□□□□ -2.01
SDC3O75056 AC010297.1-201ENST00000623948 149 ntBASIC2.48□□□□□ -2.01
SDC3O75056 FO624990.1-201ENST00000636373 85 ntBASIC2.48□□□□□ -2.01
SDC3O75056 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
SDC3O75056 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC3O75056 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SDC3O75056 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
SDC3O75056 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
SDC3O75056 ZNF658B-202ENST00000615961 3375 ntBASIC2.47□□□□□ -2.01
SDC3O75056 RNA5SP432-201ENST00000362480 116 ntBASIC2.47□□□□□ -2.01
SDC3O75056 SNORA25.6-201ENST00000364121 118 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 204.3 ms