Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AL513185.3-201ENST00000433335 1300 ntBASIC0.87□□□□□ -2.27
CCDC88BA6NC98 MT-TC-201ENST00000387405 66 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AC107626.1-201ENST00000471084 183 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AC025423.2-201ENST00000537570 439 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AL133241.1-201ENST00000556832 487 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AC004817.2-201ENST00000561794 651 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AP003400.5-201ENST00000624827 617 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
CCDC88BA6NC98 MIR92A1-201ENST00000385233 78 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC88BA6NC98 SNORA48.10-201ENST00000516965 160 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 HMGB1P14-201ENST00000557424 591 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AL078605.1-201ENST00000603529 500 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AC092192.1-201ENST00000633154 1018 ntBASIC0.86□□□□□ -2.27
CCDC88BA6NC98 AC016716.1-201ENST00000265882 708 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 U3.13-201ENST00000364804 214 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 SNORA8-201ENST00000384574 139 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AC245047.4-201ENST00000433189 144 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AL714022.1-201ENST00000439897 151 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
CCDC88BA6NC98 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AC116337.2-201ENST00000477662 156 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AC023932.2-201ENST00000603176 175 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AC073111.2-201ENST00000605657 1075 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 AC243829.6-201ENST00000612652 106 ntBASIC0.85□□□□□ -2.27
CCDC88BA6NC98 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
CCDC88BA6NC98 Y_RNA.67-201ENST00000362870 100 ntBASIC0.84□□□□□ -2.28
CCDC88BA6NC98 RNU6-1222P-201ENST00000384615 107 ntBASIC0.84□□□□□ -2.28
CCDC88BA6NC98 RPS15AP38-201ENST00000413110 372 ntBASIC0.84□□□□□ -2.28
CCDC88BA6NC98 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.84□□□□□ -2.28
CCDC88BA6NC98 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.84□□□□□ -2.28
CCDC88BA6NC98 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.84□□□□□ -2.28
CCDC88BA6NC98 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.84□□□□□ -2.28
CCDC88BA6NC98 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.84□□□□□ -2.28
CCDC88BA6NC98 RNU6-1249P-201ENST00000363237 111 ntBASIC0.83□□□□□ -2.28
CCDC88BA6NC98 RPL31P35-201ENST00000431058 377 ntBASIC0.83□□□□□ -2.28
CCDC88BA6NC98 RPS20P10-201ENST00000451209 253 ntBASIC0.83□□□□□ -2.28
CCDC88BA6NC98 AC099513.1-201ENST00000490423 301 ntBASIC0.83□□□□□ -2.28
CCDC88BA6NC98 AC098591.2-201ENST00000510152 315 ntBASIC0.83□□□□□ -2.28
CCDC88BA6NC98 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.83□□□□□ -2.28
CCDC88BA6NC98 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC88BA6NC98 RNA5SP125-201ENST00000364843 120 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 RNU6-338P-201ENST00000383888 105 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 MIR30A-201ENST00000385092 71 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 HMGN2P39-201ENST00000398005 273 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 SSXP10-201ENST00000402595 565 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 AL356421.1-201ENST00000403255 413 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 RNU2-70P-201ENST00000410718 179 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 MTND6P13-201ENST00000443510 523 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 MIR892C-201ENST00000516410 77 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 DUXAP10-204ENST00000612052 616 ntBASIC0.82□□□□□ -2.28
CCDC88BA6NC98 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.82□□□□□ -2.28
CCDC88BA6NC98 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.82□□□□□ -2.28
CCDC88BA6NC98 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC88BA6NC98 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.82□□□□□ -2.28
CCDC88BA6NC98 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.82□□□□□ -2.28
CCDC88BA6NC98 RNA5SP258-201ENST00000362750 119 ntBASIC0.81□□□□□ -2.28
CCDC88BA6NC98 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC88BA6NC98 MTCYBP29-201ENST00000436327 1006 ntBASIC0.81□□□□□ -2.28
CCDC88BA6NC98 DYNLT3P2-201ENST00000442517 295 ntBASIC0.81□□□□□ -2.28
CCDC88BA6NC98 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC88BA6NC98 AC138853.1-201ENST00000503549 823 ntBASIC0.81□□□□□ -2.28
CCDC88BA6NC98 AL590410.1-201ENST00000617925 333 ntBASIC0.81□□□□□ -2.28
CCDC88BA6NC98 AC024595.1-201ENST00000623088 387 ntBASIC0.81□□□□□ -2.28
CCDC88BA6NC98 RNU6-222P-201ENST00000362438 107 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 RNU6-697P-201ENST00000363348 107 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 FTH1P15-201ENST00000406984 280 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 RNU6-1328P-201ENST00000410938 106 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 USP9YP35-201ENST00000435696 412 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 HMGB1P35-201ENST00000503360 598 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 RNU4-23P-201ENST00000362839 140 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 SNORA40.19-201ENST00000390846 128 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 USP9YP33-201ENST00000412220 421 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 MTCO3P4-201ENST00000419236 787 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AL109913.1-201ENST00000421173 514 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 FTH1P12-201ENST00000432137 551 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AL096803.2-201ENST00000450032 677 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AL590365.1-201ENST00000450788 243 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 RPL30P6-201ENST00000475925 342 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC022447.1-201ENST00000515358 464 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC019288.1-201ENST00000557918 224 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms