Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 SNORA25.1-201ENST00000362326 128 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-227P-201ENST00000362865 103 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-326P-201ENST00000365480 107 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 Y_RNA.418-201ENST00000384029 102 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 MIR34A-201ENST00000385130 110 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 U3.39-201ENST00000408569 239 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 MIR1290-201ENST00000408735 78 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 BX510359.3-201ENST00000422168 306 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AL358472.1-201ENST00000431295 329 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AC005002.2-201ENST00000438228 269 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 MED28P6-201ENST00000558776 231 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AL390726.5-202ENST00000564800 256 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 SUMO2P15-201ENST00000604285 278 ntBASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIF3AQ9Y2N7 SAMMSON-226ENST00000642089 1582 ntBASIC4.4□□□□□ -1.7
HIF3AQ9Y2N7 AC107068.1-201ENST00000563286 4218 ntBASIC4.4□□□□□ -1.7
HIF3AQ9Y2N7 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-335P-201ENST00000364563 113 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP428-201ENST00000365129 132 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-22P-201ENST00000384355 107 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.569-201ENST00000384749 103 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 SNORA40C-201ENST00000391285 128 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 MIR1271-201ENST00000408537 86 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 CYP4F29P-201ENST00000420685 446 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AP001324.2-201ENST00000461163 319 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 OR7H2P-201ENST00000513483 306 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC074133.1-201ENST00000515696 183 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-1219P-201ENST00000516143 112 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC005476.1-201ENST00000554427 397 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 MIR4691-201ENST00000583764 85 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC060766.3-201ENST00000591442 263 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC234771.5-201ENST00000600161 514 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 AC005046.1-201ENST00000608515 625 ntBASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HIF3AQ9Y2N7 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.82-201ENST00000363000 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.92-201ENST00000363043 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-879P-201ENST00000364328 108 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.235-201ENST00000364412 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.275-201ENST00000364726 110 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.306-201ENST00000365015 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.308-201ENST00000365043 101 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.312-201ENST00000365089 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.322-201ENST00000365151 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP455-201ENST00000365190 119 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-514P-201ENST00000384208 107 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 SNORD63-201ENST00000384262 68 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-171P-201ENST00000384354 107 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-21P-201ENST00000384710 107 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AL357515.1-201ENST00000402967 542 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-1135P-201ENST00000411083 103 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RPL23AP24-201ENST00000458203 385 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.650-201ENST00000459002 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.638-201ENST00000459374 113 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms