Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 RPS20P10-201ENST00000451209 253 ntBASIC0.84□□□□□ -2.27
SCN11AQ9UI33 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC0.84□□□□□ -2.27
SCN11AQ9UI33 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC0.84□□□□□ -2.27
SCN11AQ9UI33 AP003497.1-201ENST00000528472 562 ntBASIC0.84□□□□□ -2.27
SCN11AQ9UI33 AC022254.1-201ENST00000567857 235 ntBASIC0.84□□□□□ -2.27
SCN11AQ9UI33 MIR548Y-201ENST00000582739 110 ntBASIC0.84□□□□□ -2.27
SCN11AQ9UI33 AL355877.2-201ENST00000603670 358 ntBASIC0.84□□□□□ -2.27
SCN11AQ9UI33 AC027309.3-201ENST00000623419 351 ntBASIC0.84□□□□□ -2.27
SCN11AQ9UI33 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
SCN11AQ9UI33 MIR618-201ENST00000385287 98 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 RPL23AP35-201ENST00000451906 501 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 AC104997.1-201ENST00000519761 717 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 MIR3609-201ENST00000582661 80 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 HSPE1P19-201ENST00000603327 295 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 AC092192.1-201ENST00000633154 1018 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 RNU6-697P-201ENST00000363348 107 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 RNU6-263P-201ENST00000363811 107 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 RNA5SP511-201ENST00000410487 115 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 MTND5P15-201ENST00000434246 349 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN11AQ9UI33 MIR6866-201ENST00000638146 69 ntBASIC0.83□□□□□ -2.28
SCN11AQ9UI33 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
SCN11AQ9UI33 SNORA22-201ENST00000383907 134 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 SNORA22C-201ENST00000384614 134 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 RNU6-1197P-201ENST00000391183 107 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 MTCO3P12-201ENST00000416718 547 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 MICF-203ENST00000432679 129 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.82□□□□□ -2.28
SCN11AQ9UI33 AP002371.1-201ENST00000463604 433 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
SCN11AQ9UI33 AK3P2-201ENST00000507976 429 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 RNU6-496P-201ENST00000516145 99 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 MIR3126-201ENST00000577443 74 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 AL590410.1-201ENST00000617925 333 ntBASIC0.82□□□□□ -2.28
SCN11AQ9UI33 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.81□□□□□ -2.28
SCN11AQ9UI33 MTND4P12-201ENST00000498999 1377 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 NACAP2-201ENST00000318548 624 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 RNU5D-1-201ENST00000363299 116 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 RPS15AP38-201ENST00000413110 372 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 AL590365.1-201ENST00000450788 243 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 C1DP3-201ENST00000455013 423 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN11AQ9UI33 AC090888.1-201ENST00000561335 1141 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 AC074051.3-201ENST00000570238 358 ntBASIC0.81□□□□□ -2.28
SCN11AQ9UI33 RNA5SP347-201ENST00000362445 119 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 RPL23AP32-201ENST00000395315 459 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 FTH1P15-201ENST00000406984 280 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AC092628.1-201ENST00000436250 252 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AC067863.3-201ENST00000624172 122 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 HMGB1P9-201ENST00000429856 646 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AC245047.4-201ENST00000433189 144 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 RPL39P28-201ENST00000465655 155 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 SNORA48.10-201ENST00000516965 160 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SCN11AQ9UI33 AL513185.3-201ENST00000433335 1300 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 Y_RNA.274-201ENST00000364714 101 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 RNA5SP127-201ENST00000411051 133 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 USP9YP33-201ENST00000412220 421 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN11AQ9UI33 TOMM22P2-201ENST00000430735 237 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN11AQ9UI33 USP9YP35-201ENST00000435696 412 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN11AQ9UI33 AC008379.1-201ENST00000463655 464 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 MTND4LP3-201ENST00000468320 276 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 RPS27P23-201ENST00000487608 251 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 SNORA44.1-201ENST00000517031 108 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN11AQ9UI33 DUXAP10-204ENST00000612052 616 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 AL136313.1-201ENST00000624804 202 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 AC087821.2-201ENST00000637086 450 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 AC010329.5-201ENST00000623497 2174 ntBASIC0.79□□□□□ -2.28
SCN11AQ9UI33 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.79□□□□□ -2.28
SCN11AQ9UI33 RNU6-942P-201ENST00000363002 107 ntBASIC0.78□□□□□ -2.28
SCN11AQ9UI33 AC098934.3-201ENST00000430450 190 ntBASIC0.78□□□□□ -2.28
SCN11AQ9UI33 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.78□□□□□ -2.28
SCN11AQ9UI33 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN11AQ9UI33 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN11AQ9UI33 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms