Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 Z82217.1-201ENST00000625157 8149 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 AC139713.2-214ENST00000642059 1811 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 AL391987.6-201ENST00000305671 199 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 MIR423-201ENST00000362201 94 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 RNU1-14P-201ENST00000362759 152 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.54-201ENST00000362766 105 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 RNU6-611P-201ENST00000384276 104 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 SNORA70E-201ENST00000384492 135 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 SNORA37-201ENST00000384504 129 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 ENSAP1-201ENST00000392855 326 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 MIR1298-201ENST00000408783 112 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 SYF2P2-201ENST00000417620 583 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 RPS3AP46-201ENST00000448352 682 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 RPS29P19-201ENST00000479709 171 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.683-201ENST00000516508 93 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 RNU7-4P-201ENST00000516961 62 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 IGKV2-38-201ENST00000517443 247 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 MIR4330-201ENST00000579077 105 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 AL356218.2-201ENST00000605264 187 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 FAM27D1-201ENST00000612308 341 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 AL450472.1-202ENST00000637286 180 ntBASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC39Q9UFE4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 XIAPP3-201ENST00000312918 795 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.183-201ENST00000363882 113 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.277-201ENST00000364754 102 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.471-201ENST00000384312 102 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 RPS12P23-201ENST00000419579 400 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 RNU7-120P-201ENST00000459334 63 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 RPL7P49-201ENST00000471402 708 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 RPS29P26-201ENST00000477483 171 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 RPS23P1-201ENST00000491662 432 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 AC110792.1-201ENST00000491826 472 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 RPL31P61-201ENST00000496160 376 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 SNORA31.6-201ENST00000516241 130 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 CDH12P4-201ENST00000517835 295 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 CDH12P3-201ENST00000517935 295 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 CDH12P1-201ENST00000518435 295 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 AC093227.2-201ENST00000589357 285 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 MZT1P2-201ENST00000604387 248 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 AC002044.1-201ENST00000606707 158 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 NCAPGP1-201ENST00000505112 1814 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 GABPAP-201ENST00000419271 1356 ntBASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC39Q9UFE4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.48-201ENST00000362710 103 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.83-201ENST00000363005 113 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 RNU6-704P-201ENST00000364162 103 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 RNU6-1226P-201ENST00000384317 107 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 RPL21P24-201ENST00000413752 448 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 CYP4F29P-201ENST00000420685 446 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 RPL23AP38-201ENST00000423801 469 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 AC096920.1-201ENST00000423991 241 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 UBE2V1P4-201ENST00000425374 344 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 RPL23AP46-201ENST00000438548 490 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 AL353691.1-201ENST00000451332 387 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 BTF3L4P4-201ENST00000506381 449 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 AC107393.1-201ENST00000512403 346 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms