Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 MTHFD2P2-201ENST00000407725 247 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RNU2-71P-201ENST00000411395 189 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 Z99755.1-201ENST00000414048 380 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 MTND2P23-201ENST00000422990 651 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 UBE2D3P2-201ENST00000424409 445 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 MTND5P19-201ENST00000424872 1794 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RPL18P10-201ENST00000425606 538 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AL356535.1-201ENST00000440335 398 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC009237.8-201ENST00000445492 379 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 KPNA2P1-201ENST00000458289 1591 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC087884.1-201ENST00000469738 328 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC069499.1-201ENST00000489433 509 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 MTND3P25-201ENST00000509243 135 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 SMURF2P1-201ENST00000514992 481 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 SNORA70.16-201ENST00000516390 95 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 MIR892C-201ENST00000516410 77 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RNA5SP471-201ENST00000516971 106 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RAB9BP1-201ENST00000519581 626 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AP003730.1-201ENST00000524605 285 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AP003122.3-201ENST00000526316 255 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC084851.1-201ENST00000529105 249 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 OR5D17P-201ENST00000531492 978 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 OR1M4P-201ENST00000589199 287 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AL645944.1-201ENST00000603857 493 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 AC018462.2-201ENST00000605375 395 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 ARF4P1-201ENST00000605447 541 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 UBE3AP2-201ENST00000429033 2259 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC091152.2-201ENST00000591628 2569 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 Y_RNA.324-201ENST00000365165 102 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RNU6-1329P-201ENST00000365664 107 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 SNORA75B-201ENST00000384053 137 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RNU1-89P-201ENST00000384592 164 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RNU6-1179P-201ENST00000384667 107 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 PPIAP31-201ENST00000405422 495 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RNU6-1050P-201ENST00000410388 107 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC016397.1-201ENST00000412463 242 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC108032.1-201ENST00000416706 207 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RPL7P37-201ENST00000425095 738 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC091390.3-201ENST00000426478 338 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 HIGD1AP11-201ENST00000438361 280 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC083863.1-201ENST00000438811 231 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 HMGB1P37-201ENST00000439613 609 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AL137792.2-201ENST00000443484 235 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 SNORD5.1-201ENST00000458800 75 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC104472.2-201ENST00000469035 601 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC105137.1-201ENST00000484355 562 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 SUMO2P6-201ENST00000505273 288 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RNU6-1256P-201ENST00000516539 103 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RNA5SP290-201ENST00000517133 127 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC004024.1-201ENST00000549244 247 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC025423.5-201ENST00000550230 219 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 TRAV37-201ENST00000553906 342 ntBASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.56□□□□□ -1.84
VSX1Q9NZR4 AL360085.1-201ENST00000604713 532 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms