Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 HMGN2P31-201ENST00000432430 273 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RNU7-143P-201ENST00000516781 65 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RNA5SP179-201ENST00000517284 121 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 IGKV2D-19-201ENST00000523346 262 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AC104576.1-201ENST00000524225 88 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 ATP5F1P5-201ENST00000526403 760 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AC091167.4-201ENST00000605079 184 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 SNORD35B-201ENST00000363660 87 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 RPL21P17-201ENST00000397467 475 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 RNU6-174P-201ENST00000410406 106 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 RN7SKP177-201ENST00000410567 355 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 EIF4EP1-201ENST00000422311 642 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 USP9YP7-201ENST00000436723 430 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 USP9YP32-201ENST00000452432 430 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 RPL17P19-201ENST00000489069 552 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 SUMO2P6-201ENST00000505273 288 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 AC110794.1-201ENST00000505816 425 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 MIR892C-201ENST00000516410 77 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 RNU6-635P-201ENST00000516651 102 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 AC009812.2-201ENST00000517657 457 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 AL157871.3-201ENST00000557231 293 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 MIR3921-201ENST00000577308 85 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 AC098826.3-201ENST00000603823 466 ntBASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC87Q9NVE4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.33-201ENST00000362591 102 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.188-201ENST00000363952 111 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 RNU6-1318P-201ENST00000365389 103 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 SET-203ENST00000372688 801 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.424-201ENST00000384063 103 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 RNU6-505P-201ENST00000384427 107 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 MIR183-201ENST00000384958 110 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 SNORA59A-201ENST00000459326 152 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 RPL9P32-201ENST00000464118 620 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 AC074250.1-201ENST00000511117 192 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 ACA59.1-201ENST00000515966 143 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 RNU4-77P-201ENST00000516692 156 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 SNORA31.20-201ENST00000517111 133 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 AC022616.4-201ENST00000522985 181 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 MIR4298-201ENST00000584380 73 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 AP000787.2-201ENST00000604432 568 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 AC100812.1-201ENST00000607622 580 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 SNORD39.4-201ENST00000620099 78 ntBASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CCDC87Q9NVE4 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 CDC27P3-201ENST00000635418 1910 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 RNU6-512P-201ENST00000364438 103 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 RNU6-790P-201ENST00000384479 105 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.577-201ENST00000384794 101 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 NDUFB4P4-201ENST00000404822 243 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 MIR1290-201ENST00000408735 78 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 RNU6-847P-201ENST00000411115 108 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 CBX3P6-201ENST00000430257 527 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 RANP8-201ENST00000444720 713 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 RPL23AP31-201ENST00000456160 467 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AC112492.4-201ENST00000456549 352 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 RPS23P3-201ENST00000470993 430 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 PPIAP15-201ENST00000479662 484 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AL049874.1-201ENST00000489560 388 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 136.5 ms