Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 SNORA14.1-201ENST00000516113 141 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 RN7SKP289-201ENST00000517244 295 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 AP003122.3-201ENST00000526316 255 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 AC084851.1-201ENST00000529105 249 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 AL160281.1-201ENST00000605307 311 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 AC021646.1-201ENST00000605469 484 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VTA1Q9NP79 AC069234.5-201ENST00000611056 416 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 AL110115.1-201ENST00000614396 364 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 AL359314.1-201ENST00000616913 261 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 AL359697.1-201ENST00000624879 587 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.05□□□□□ -1.76
VTA1Q9NP79 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.05□□□□□ -1.76
VTA1Q9NP79 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VTA1Q9NP79 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
VTA1Q9NP79 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
VTA1Q9NP79 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VTA1Q9NP79 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VTA1Q9NP79 SNORA4.3-201ENST00000365564 137 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 MIR493-201ENST00000385254 89 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VTA1Q9NP79 AL139039.1-201ENST00000401900 692 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AL356432.1-201ENST00000405809 419 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 MTHFD2P2-201ENST00000407725 247 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 RNU6-1148P-201ENST00000410992 104 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 RN7SKP53-201ENST00000411337 315 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 RHEBP3-201ENST00000411920 351 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 TMEM167AP1-201ENST00000423409 219 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AC007919.1-201ENST00000429380 217 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.04□□□□□ -1.76
VTA1Q9NP79 HMGN2P16-201ENST00000456802 261 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 RPL21P10-201ENST00000463521 490 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 FTH1P9-201ENST00000513251 355 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 RNU6-1038P-201ENST00000516516 104 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 Y_RNA.691-201ENST00000516611 103 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 RNA5SP309-201ENST00000516670 106 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 RN7SKP209-201ENST00000516888 304 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AC069113.1-201ENST00000517763 267 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AP000763.2-201ENST00000540641 163 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.04□□□□□ -1.76
VTA1Q9NP79 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AC243960.4-201ENST00000600532 288 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 AP003355.3-201ENST00000623465 114 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC4.04□□□□□ -1.76
VTA1Q9NP79 MIR3651-201ENST00000630427 90 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 TPTEP1-208ENST00000636884 213 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
VTA1Q9NP79 CUL1P1-201ENST00000509510 2425 ntBASIC4.04□□□□□ -1.76
VTA1Q9NP79 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VTA1Q9NP79 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.04□□□□□ -1.76
VTA1Q9NP79 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VTA1Q9NP79 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 RNU4-35P-201ENST00000362588 141 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC007390.1-201ENST00000415722 356 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 DBIP2-201ENST00000419076 262 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 HMGB3P11-201ENST00000440127 604 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AL356535.1-201ENST00000440335 398 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 BX510359.1-201ENST00000456973 237 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 RNU7-66P-201ENST00000459469 62 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC084357.1-201ENST00000473404 255 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 KC877373.1-201ENST00000479066 408 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC083904.1-201ENST00000487828 231 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 AP000889.2-201ENST00000532684 490 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 RPS3AP23-202ENST00000574601 686 ntBASIC4.03□□□□□ -1.76
VTA1Q9NP79 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VTA1Q9NP79 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.03□□□□□ -1.76
VTA1Q9NP79 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.77
VTA1Q9NP79 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.03□□□□□ -1.77
VTA1Q9NP79 MTND4P29-201ENST00000503122 1372 ntBASIC4.02□□□□□ -1.77
VTA1Q9NP79 AC032011.1-201ENST00000611703 1549 ntBASIC4.02□□□□□ -1.77
VTA1Q9NP79 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VTA1Q9NP79 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms