Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 AC108729.1-201ENST00000487812 947 ntBASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 AC009902.1-201ENST00000519351 183 ntBASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 AP006587.4-201ENST00000526053 529 ntBASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 NDUFA8P1-201ENST00000605525 367 ntBASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
VCX3AQ9NNX9 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 RNU1-23P-201ENST00000363361 144 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 RNU6-898P-201ENST00000365627 104 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 RNU6-1032P-201ENST00000384100 107 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 RNU6-413P-201ENST00000384115 107 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 U8.14-201ENST00000390843 143 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AL445669.1-201ENST00000426743 755 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 MTCO1P53-201ENST00000441633 699 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 BRK1P2-201ENST00000442875 223 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 FAM103A2P-201ENST00000444122 354 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 RPL21P99-201ENST00000480369 423 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC055855.1-201ENST00000489563 579 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC104629.1-201ENST00000494226 508 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC096745.1-201ENST00000509945 370 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 RANP3-201ENST00000530970 276 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC022880.1-201ENST00000534017 973 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 SNRPGP18-201ENST00000553000 214 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC007375.1-201ENST00000554513 578 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 GTF3AP2-201ENST00000557014 266 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 AC010378.1-201ENST00000619270 362 ntBASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
VCX3AQ9NNX9 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.71□□□□□ -2.13
VCX3AQ9NNX9 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 SNORD48-201ENST00000364953 64 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 RNU6-701P-201ENST00000384059 107 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 MIR518A2-201ENST00000384966 87 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 Y_RNA.625-201ENST00000411256 107 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC096664.2-201ENST00000411843 406 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AP000949.1-201ENST00000438328 629 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 DNAJC19P4-201ENST00000440115 345 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 RPS3P1-201ENST00000456781 192 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 RPL7P49-201ENST00000471402 708 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC117503.1-201ENST00000472241 394 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AHI1-208ENST00000488690 712 ntTSL 5 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC023194.1-201ENST00000493084 308 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC016550.1-201ENST00000505348 785 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC109445.1-201ENST00000512356 383 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC034114.1-201ENST00000520293 285 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 IGKV3-31-201ENST00000523109 329 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 MIR4782-201ENST00000577987 79 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 MIR5089-201ENST00000580047 84 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 MIR3158-1-201ENST00000583596 81 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC243960.4-201ENST00000600532 288 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC090970.3-201ENST00000612566 866 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AL773524.1-201ENST00000614065 229 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC131280.1-202ENST00000624067 4211 ntBASIC1.71□□□□□ -2.14
VCX3AQ9NNX9 AC092125.1-201ENST00000562568 1995 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 OR5J1P-201ENST00000313544 939 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 MIR561-201ENST00000385216 97 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 MIR1302-8-201ENST00000408342 128 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AL139156.1-201ENST00000412785 841 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 YME1L1P1-201ENST00000429435 297 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 MTND6P13-201ENST00000443510 523 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC007327.1-201ENST00000447461 264 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 snoU109.1-201ENST00000459339 135 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 RN7SL432P-201ENST00000484057 298 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms