Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 MIR4672-201ENST00000583126 81 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AC098848.2-201ENST00000588023 330 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 BNIP3P9-201ENST00000603714 553 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AC098826.3-201ENST00000603823 466 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AC007363.1-201ENST00000604736 620 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AL035413.2-201ENST00000604801 525 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AC107871.2-201ENST00000612894 502 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AC004852.3-201ENST00000614131 326 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 uc_338.11-201ENST00000619132 160 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AC068880.5-201ENST00000624331 290 ntBASIC3.35□□□□□ -1.87
USP44Q9H0E7 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.35□□□□□ -1.87
USP44Q9H0E7 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
USP44Q9H0E7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
USP44Q9H0E7 MAPK10-362ENST00000641864 4484 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP44Q9H0E7 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.34□□□□□ -1.87
USP44Q9H0E7 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.34□□□□□ -1.87
USP44Q9H0E7 AC092435.3-201ENST00000565538 3654 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP44Q9H0E7 MTND5P26-201ENST00000426018 1752 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 UBE2L2-201ENST00000254302 429 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 RNU6-259P-201ENST00000383999 107 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 RNU6-1103P-201ENST00000384150 107 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 MIR301A-201ENST00000385261 86 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AC080125.1-201ENST00000414888 684 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AL109913.1-201ENST00000421173 514 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 GPM6BP2-201ENST00000432046 144 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AL358934.1-201ENST00000432346 324 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 HIGD1AP11-201ENST00000438361 280 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 GPM6BP1-201ENST00000446387 144 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.34□□□□□ -1.87
USP44Q9H0E7 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USP44Q9H0E7 MTCYBP1-201ENST00000454315 1119 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AC105252.1-201ENST00000503089 286 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP44Q9H0E7 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.34□□□□□ -1.87
USP44Q9H0E7 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.34□□□□□ -1.87
USP44Q9H0E7 DPPA3P3-201ENST00000603842 430 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AC087241.4-201ENST00000612441 480 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AL359547.2-201ENST00000615810 418 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AC073308.1-201ENST00000623696 305 ntBASIC3.34□□□□□ -1.87
USP44Q9H0E7 AC108206.1-201ENST00000570186 4159 ntBASIC3.34□□□□□ -1.88
USP44Q9H0E7 MTND5P7-201ENST00000413558 1798 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 RPS12P24-201ENST00000412619 387 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 CALM2P2-201ENST00000428512 440 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 AL591704.1-201ENST00000432574 275 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 MTND4P25-201ENST00000441039 533 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC132479.1-201ENST00000449160 144 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 FABP5P15-201ENST00000453566 214 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 C1DP4-201ENST00000455429 424 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 RPS3AP17-201ENST00000472594 777 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 RPS15AP34-201ENST00000487776 387 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 HMGB1P29-201ENST00000505659 499 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC091133.4-201ENST00000511142 308 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 SNORA31.21-201ENST00000517180 77 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC245505.1-201ENST00000556398 224 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 MIR3162-201ENST00000581818 82 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC068790.6-201ENST00000602558 258 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 MIR6852-201ENST00000621699 66 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC009161.2-201ENST00000624626 138 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC005609.4-201ENST00000625071 447 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 SCARNA15.3-201ENST00000626315 122 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 SCARNA4.1-201ENST00000628597 123 ntBASIC3.33□□□□□ -1.88
USP44Q9H0E7 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP44Q9H0E7 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP44Q9H0E7 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP44Q9H0E7 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.33□□□□□ -1.88
USP44Q9H0E7 AC093010.3-201ENST00000570269 15214 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 Y_RNA.3-201ENST00000362331 103 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 RNU6-181P-201ENST00000363225 107 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 RNU6-282P-201ENST00000365357 103 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 RNU6-641P-201ENST00000384006 107 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 RNU6-190P-201ENST00000384154 102 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 RNU6-39P-201ENST00000384344 107 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AL512633.1-201ENST00000399931 655 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 MTCO1P21-201ENST00000416634 589 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 BTF3L4P3-201ENST00000418879 476 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 TRIAP1P1-201ENST00000427062 225 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 SNRPEP9-201ENST00000436794 238 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 DNAJC19P4-201ENST00000440115 345 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms