Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
CNKSR3Q6P9H4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNKSR3Q6P9H4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 Y_RNA.64-201ENST00000362845 102 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 RNU6-1284P-201ENST00000363701 100 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 Y_RNA.314-201ENST00000365114 102 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 RNU6-434P-201ENST00000384376 107 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 SYF2P2-201ENST00000417620 583 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC097713.2-201ENST00000430199 356 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 HMGN2P31-201ENST00000432430 273 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AL359672.1-201ENST00000442302 409 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 RPS27AP1-201ENST00000475545 471 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 RN7SL432P-201ENST00000484057 298 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC108860.1-201ENST00000484521 383 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC092436.3-201ENST00000511788 257 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 Y_RNA.673-201ENST00000516306 88 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC025423.5-201ENST00000550230 219 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 SETP7-201ENST00000552169 453 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 MIR5188-201ENST00000583467 113 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 AL589994.2-201ENST00000621124 579 ntBASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CNKSR3Q6P9H4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 HSPA8P4-201ENST00000511877 1920 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 RNU6-770P-201ENST00000363929 105 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 Y_RNA.276-201ENST00000364732 109 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 RNU6-754P-201ENST00000391166 107 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AC110754.1-201ENST00000399740 601 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AL109755.1-201ENST00000401791 649 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AL590135.1-201ENST00000422215 156 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 RNU7-187P-201ENST00000458985 68 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AL591473.1-201ENST00000464297 313 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 UBE2CP3-201ENST00000502715 450 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 RNU6-307P-201ENST00000516743 106 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AC040926.1-201ENST00000530195 238 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 HSPE1P20-201ENST00000538133 289 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AC022080.3-201ENST00000544433 482 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 AL512643.1-201ENST00000635735 524 ntBASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.31□□□□□ -1.72
CNKSR3Q6P9H4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 RNA5SP399-201ENST00000364003 117 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 RNU6-200P-201ENST00000364743 107 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 MIR491-201ENST00000384877 84 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 SNORD96B-201ENST00000386148 79 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AL139039.1-201ENST00000401900 692 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 RPS4XP7-201ENST00000406274 780 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 RPL21P24-201ENST00000413752 448 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AC092447.6-201ENST00000414578 210 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 MTATP6P29-201ENST00000415057 132 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AC139712.2-201ENST00000424302 339 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AC091390.3-201ENST00000426478 338 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AL591419.1-201ENST00000427423 339 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 RPL35AP22-201ENST00000436855 335 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 CYCSP43-201ENST00000438233 310 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 PRDX3P3-201ENST00000447765 522 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 RPL39P38-201ENST00000467018 153 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 S100A11P1-201ENST00000477525 312 ntBASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.3□□□□□ -1.72
CNKSR3Q6P9H4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms