Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MTHFD2P2-201ENST00000407725 247 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 RNU2-37P-201ENST00000410695 177 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 CRYBB2P1-203ENST00000415709 538 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC092047.1-201ENST00000424997 240 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 GPM6BP2-201ENST00000432046 144 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 GPM6BP1-201ENST00000446387 144 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 snoU13.22-201ENST00000459428 104 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 RPL7P49-201ENST00000471402 708 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 RPL30P5-201ENST00000494923 336 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC009901.1-201ENST00000506703 541 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-1069P-201ENST00000516612 133 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AP000889.2-201ENST00000532684 490 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AP000763.2-201ENST00000540641 163 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 GLYCAM1-201ENST00000546596 285 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC012119.1-201ENST00000603184 222 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC104237.2-201ENST00000612456 443 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AC012314.7-201ENST00000619693 93 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AL732372.2-225ENST00000642124 456 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 AL133383.2-201ENST00000622958 2336 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 CEP170P1-201ENST00000502249 4587 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AC007656.2-201ENST00000624902 4547 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AL021368.2-201ENST00000606125 5352 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 SNORA63.1-201ENST00000362493 131 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP119-201ENST00000362715 117 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 SNORA70.4-201ENST00000365509 134 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-395P-201ENST00000365662 106 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 Y_RNA.535-201ENST00000384612 99 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 MIR7-3-201ENST00000384898 110 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP44-201ENST00000410446 133 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RPL21P90-201ENST00000415692 466 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AC017083.1-201ENST00000428093 483 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 Z82210.1-201ENST00000440037 231 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RPL23AP62-201ENST00000463396 453 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AC008716.1-201ENST00000511084 513 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RN7SKP18-201ENST00000516005 275 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-1282P-201ENST00000516735 96 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP290-201ENST00000517133 127 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RN7SKP289-201ENST00000517244 295 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AP003122.3-201ENST00000526316 255 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AC084851.1-201ENST00000529105 249 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 MIR3944-201ENST00000581277 108 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 MIR3922-201ENST00000585192 84 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 AC022140.2-201ENST00000623500 188 ntBASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PTCHD3Q3KNS1 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 SNORD46.1-201ENST00000364139 104 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 RNA5SP387-201ENST00000364226 106 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 MIR493-201ENST00000385254 89 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 U3.42-201ENST00000408746 214 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 RPS20P15-201ENST00000412792 311 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AL353621.1-201ENST00000418219 243 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AL158156.1-201ENST00000422509 473 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AC006989.1-201ENST00000427212 131 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AL360271.2-201ENST00000447710 161 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 RPS3AP46-201ENST00000448352 682 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 RPS4XP13-201ENST00000483219 789 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 HMGB1P30-201ENST00000492455 606 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 RNU6-277P-201ENST00000516272 106 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 RNU6-256P-201ENST00000516747 97 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms