Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC091951.2-201ENST00000500762 203 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.45□□□□□ -1.7
SF3A1Q15459 RNU6-1069P-201ENST00000516612 133 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 NACAP3-201ENST00000552100 481 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AC090877.1-201ENST00000561418 344 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 CYCSP39-201ENST00000565821 309 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 MIR4742-201ENST00000581069 85 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 BNIP3P22-201ENST00000593399 556 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AC244505.7-201ENST00000599675 272 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AL591034.3-201ENST00000605511 685 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AL391261.4-201ENST00000616012 481 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.45□□□□□ -1.7
SF3A1Q15459 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.45□□□□□ -1.7
SF3A1Q15459 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.45□□□□□ -1.7
SF3A1Q15459 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.45□□□□□ -1.7
SF3A1Q15459 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SF3A1Q15459 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SF3A1Q15459 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SF3A1Q15459 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
SF3A1Q15459 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.45□□□□□ -1.7
SF3A1Q15459 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SF3A1Q15459 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SF3A1Q15459 ADAM3A-203ENST00000461344 2157 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SF3A1Q15459 AC233263.6-201ENST00000631132 1963 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 RNU6-898P-201ENST00000365627 104 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 MIR23A-201ENST00000385245 73 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 RNU6-1009P-201ENST00000390996 107 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 HMGN2P8-201ENST00000391458 268 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 PTMAP5-201ENST00000393073 333 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 AL445189.1-201ENST00000405722 338 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 MTND3P8-201ENST00000412909 339 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 AL353678.1-201ENST00000422735 741 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.44□□□□□ -1.7
SF3A1Q15459 AL365400.1-201ENST00000431854 640 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.44□□□□□ -1.7
SF3A1Q15459 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.44□□□□□ -1.7
SF3A1Q15459 HIGD1AP11-201ENST00000438361 280 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.44□□□□□ -1.7
SF3A1Q15459 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.44□□□□□ -1.7
SF3A1Q15459 snoU109.2-201ENST00000459316 135 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 IGKV2-23-201ENST00000518729 323 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.44□□□□□ -1.7
SF3A1Q15459 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.44□□□□□ -1.7
SF3A1Q15459 AC025423.5-201ENST00000550230 219 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 SCOCP1-201ENST00000554676 349 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 AC026464.5-201ENST00000562497 722 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 RNU6-85P-201ENST00000605989 107 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 MIR92B-201ENST00000607575 96 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 MIR8058-201ENST00000615737 89 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 AC104260.1-201ENST00000616660 539 ntBASIC4.44□□□□□ -1.7
SF3A1Q15459 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.44□□□□□ -1.7
SF3A1Q15459 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.44□□□□□ -1.7
SF3A1Q15459 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SF3A1Q15459 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.43□□□□□ -1.7
SF3A1Q15459 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SF3A1Q15459 FAM35DP-201ENST00000323387 2712 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC138393.1-203ENST00000327086 343 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 RPL21P65-201ENST00000406094 466 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 RN7SKP32-201ENST00000410167 303 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 CYCSP32-201ENST00000440548 321 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.43□□□□□ -1.7
SF3A1Q15459 RNU7-138P-201ENST00000459479 64 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AP002884.2-201ENST00000471647 395 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.43□□□□□ -1.7
SF3A1Q15459 RNU7-30P-201ENST00000516835 62 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC087854.1-201ENST00000519706 414 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 LINC00933-203ENST00000559812 219 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC009994.1-201ENST00000606889 253 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC004852.3-201ENST00000614131 326 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC112484.5-201ENST00000624189 228 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 AC034229.5-201ENST00000624258 185 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.43□□□□□ -1.7
SF3A1Q15459 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SF3A1Q15459 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.43□□□□□ -1.7
SF3A1Q15459 AC091152.2-201ENST00000591628 2569 ntBASIC4.43□□□□□ -1.7
SF3A1Q15459 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SF3A1Q15459 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.42□□□□□ -1.7
SF3A1Q15459 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SF3A1Q15459 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
SF3A1Q15459 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
SF3A1Q15459 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.42□□□□□ -1.7
SF3A1Q15459 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNU6-254P-201ENST00000363377 107 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
SF3A1Q15459 AL359837.1-201ENST00000381357 287 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNU1-101P-201ENST00000391171 127 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNA5SP317-201ENST00000410176 116 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNA5SP311-201ENST00000411290 116 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RPS15AP6-201ENST00000420703 385 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNU6-329P-201ENST00000459618 107 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 TRBV12-2-201ENST00000489763 344 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.42□□□□□ -1.7
SF3A1Q15459 RNA5SP315-201ENST00000516340 116 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNU6-875P-201ENST00000516488 106 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNU6-1332P-201ENST00000516666 104 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNU6-256P-201ENST00000516747 97 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 RNA5SP312-201ENST00000517068 116 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms