Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNA5SP450-201ENST00000411206 102 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL512661.1-201ENST00000434586 1253 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL714022.1-201ENST00000439897 151 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.18□□□□□ -2.22
CHD3Q12873 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 AC116337.2-201ENST00000477662 156 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC1.18□□□□□ -2.22
CHD3Q12873 RNU6-885P-201ENST00000516607 104 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.18□□□□□ -2.22
CHD3Q12873 CBX3P7-201ENST00000532876 502 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 LARP7P2-201ENST00000575306 125 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC097468.3-201ENST00000607956 456 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC007349.4-201ENST00000608114 532 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC008498.1-201ENST00000613012 531 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.18□□□□□ -2.22
CHD3Q12873 MIR6767-201ENST00000637302 66 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.18□□□□□ -2.22
CHD3Q12873 AL390862.1-201ENST00000635467 1469 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 EIF4EP4-201ENST00000424916 578 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 ZNF863P-201ENST00000426746 417 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 VN1R108P-201ENST00000431580 830 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.17□□□□□ -2.22
CHD3Q12873 AL049734.2-201ENST00000441066 616 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 FGF7P5-201ENST00000441829 291 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 AC244505.5-201ENST00000443639 207 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 DYNLL1P5-201ENST00000467158 270 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 AF213884.2-201ENST00000510417 903 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 SNORA31.24-201ENST00000517232 57 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.17□□□□□ -2.22
CHD3Q12873 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.17□□□□□ -2.22
CHD3Q12873 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.17□□□□□ -2.22
CHD3Q12873 SULT1C2P1-202ENST00000562418 459 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 AP001269.3-201ENST00000588718 329 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.17□□□□□ -2.22
CHD3Q12873 AC016911.1-201ENST00000613297 452 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 AL133216.2-202ENST00000634512 349 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.17□□□□□ -2.22
CHD3Q12873 AC010889.1-201ENST00000566193 2666 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CHD3Q12873 SGO1P1-201ENST00000603525 1447 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CHD3Q12873 AC110491.1-201ENST00000562191 2010 ntBASIC1.17□□□□□ -2.22
CHD3Q12873 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
CHD3Q12873 SDAD1P3-201ENST00000427380 333 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 HSPE1P24-201ENST00000450782 238 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 SUMO2P6-201ENST00000505273 288 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.16□□□□□ -2.22
CHD3Q12873 RNA5SP135-201ENST00000517019 125 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 AC008269.2-201ENST00000561915 1105 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 MIR3660-201ENST00000584845 100 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 FAM106DP-201ENST00000586416 501 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 AC025588.2-201ENST00000604851 466 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
CHD3Q12873 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.16□□□□□ -2.22
CHD3Q12873 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.16□□□□□ -2.22
CHD3Q12873 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
CHD3Q12873 AL161722.3-201ENST00000605789 2983 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 RNU1-22P-201ENST00000363334 158 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 SNORD26-201ENST00000384147 75 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 MIR320A-201ENST00000385302 82 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 U3.20-201ENST00000390909 217 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 HMGN1P14-201ENST00000412459 517 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 RPS12P24-201ENST00000412619 387 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 MTCYBP11-201ENST00000447254 1109 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 snoU109.1-201ENST00000459339 135 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC1.16□□□□□ -2.22
CHD3Q12873 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.16□□□□□ -2.22
CHD3Q12873 AC084024.2-201ENST00000503480 791 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 AC093801.2-201ENST00000503966 1050 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 LTV1P1-201ENST00000510683 1237 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 RNU6-970P-201ENST00000516312 107 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.16□□□□□ -2.22
CHD3Q12873 AC012435.1-202ENST00000568772 240 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 MIR6078-201ENST00000611069 100 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 AC004009.2-201ENST00000623016 728 ntBASIC1.16□□□□□ -2.22
CHD3Q12873 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.15□□□□□ -2.22
CHD3Q12873 U3.13-201ENST00000364804 214 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 RNU6-650P-201ENST00000365658 111 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 RPL22P22-201ENST00000395439 379 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.15□□□□□ -2.22
CHD3Q12873 AL451054.2-201ENST00000420896 202 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AC246680.2-201ENST00000422106 389 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.15□□□□□ -2.22
CHD3Q12873 RPL26P9-201ENST00000457466 433 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 RPL30P5-201ENST00000494923 336 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 HSPA8P13-201ENST00000523715 472 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AP005597.4-201ENST00000526762 229 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC1.15□□□□□ -2.22
CHD3Q12873 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.15□□□□□ -2.22
CHD3Q12873 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.15□□□□□ -2.22
CHD3Q12873 AC023813.2-201ENST00000564321 469 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AL713866.2-201ENST00000603579 219 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AL161729.4-201ENST00000604650 476 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AP005137.2-201ENST00000609238 400 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AC103710.4-201ENST00000609301 899 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AC073968.1-201ENST00000618594 637 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 AC090772.4-201ENST00000623599 362 ntBASIC1.15□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms