Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL137003.2-201ENST00000606924 2538 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 MTND5P33-201ENST00000571250 1450 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA1P55317 SNORA68.1-201ENST00000364537 132 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 SNORA46.1-201ENST00000391069 153 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 MIR888-201ENST00000401186 77 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 RNU6-757P-201ENST00000410334 100 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 RNU2-49P-201ENST00000410666 184 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 RNU2-40P-201ENST00000410833 196 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA1P55317 PIGPP2-201ENST00000411569 458 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AL359704.1-201ENST00000411586 781 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC023141.4-201ENST00000412031 328 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA1P55317 AL445669.1-201ENST00000426743 755 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA1P55317 AC010153.1-201ENST00000432862 727 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA1P55317 RPL26P9-201ENST00000457466 433 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA1P55317 RNU7-26P-201ENST00000458980 63 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC107626.1-201ENST00000471084 183 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC010631.1-201ENST00000474150 156 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AL160314.1-201ENST00000490836 438 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA1P55317 EIF4EP3-201ENST00000498782 656 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 MTATP6P9-201ENST00000515039 680 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.68□□□□□ -2.14
FOXA1P55317 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA1P55317 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXA1P55317 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA1P55317 AC007375.1-201ENST00000554513 578 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC104581.2-201ENST00000572227 430 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 MIR3618-201ENST00000580330 88 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXA1P55317 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA1P55317 AC025754.2-201ENST00000606491 432 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AL139022.2-201ENST00000606934 443 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC239868.4-201ENST00000608318 671 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC097478.2-201ENST00000610572 514 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA1P55317 AL109620.1-201ENST00000618738 1197 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AP000484.1-201ENST00000620067 1252 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AP000676.3-201ENST00000623299 569 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC091932.3-201ENST00000624223 323 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA1P55317 MIR7515-201ENST00000637837 67 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 AC092881.1-201ENST00000638218 2733 ntBASIC1.68□□□□□ -2.14
FOXA1P55317 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
FOXA1P55317 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
FOXA1P55317 MIR19A-201ENST00000384878 82 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 CCNG1P1-201ENST00000406783 885 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 RPL21P24-201ENST00000413752 448 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 BTF3L4P3-201ENST00000418879 476 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 USP9YP26-201ENST00000421008 661 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 RPS15AP5-201ENST00000436276 388 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AC004854.1-201ENST00000440356 349 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AC020550.1-201ENST00000447385 163 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.67□□□□□ -2.14
FOXA1P55317 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA1P55317 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA1P55317 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA1P55317 AC119751.4-201ENST00000507498 357 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
FOXA1P55317 MTND5P13-201ENST00000513046 1079 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AC110760.3-202ENST00000515177 371 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 SCARNA17.1-201ENST00000516211 143 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 SCARNA17.2-201ENST00000516334 143 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 RNA5SP290-201ENST00000517133 127 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA1P55317 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.67□□□□□ -2.14
FOXA1P55317 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
FOXA1P55317 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA1P55317 AC012493.3-201ENST00000604494 112 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 RNU6-88P-201ENST00000606801 100 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AC009974.1-201ENST00000608881 455 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 OR10AB1P-201ENST00000609613 938 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AC009318.2-201ENST00000610917 651 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 SCARNA17.4-201ENST00000614296 143 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.67□□□□□ -2.14
FOXA1P55317 DLEU1_2.1-201ENST00000617920 342 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AC068057.2-201ENST00000624047 895 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 AL356596.1-201ENST00000624230 379 ntBASIC1.67□□□□□ -2.14
FOXA1P55317 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXA1P55317 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXA1P55317 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA1P55317 RNU6-723P-201ENST00000383973 107 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 RNU6-925P-201ENST00000384629 104 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA1P55317 AC019129.1-201ENST00000403786 261 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 USP9YP13-201ENST00000417797 480 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 USP12PX-201ENST00000432383 1057 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC084290.1-201ENST00000434995 374 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 SNRPEP9-201ENST00000436794 238 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA1P55317 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA1P55317 ELOCP30-201ENST00000447108 299 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 PSPHP1-201ENST00000450062 261 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
FOXA1P55317 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms