Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL4A4P53420 RNU6-1339P-201ENST00000363574 91 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 Y_RNA.326-201ENST00000365176 113 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 MIR217-201ENST00000384817 110 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 MIR221-201ENST00000385135 110 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
COL4A4P53420 SNRPEP2-201ENST00000397592 279 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 RNU6-248P-201ENST00000410720 107 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 MTND3P17-201ENST00000416968 344 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 BTF3L4P3-201ENST00000418879 476 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.33□□□□□ -2.04
COL4A4P53420 AL451074.3-201ENST00000437709 472 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.33□□□□□ -2.04
COL4A4P53420 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.33□□□□□ -2.04
COL4A4P53420 AC132479.1-201ENST00000449160 144 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 SNRPGP6-201ENST00000451124 220 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.33□□□□□ -2.04
COL4A4P53420 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.33□□□□□ -2.04
COL4A4P53420 RPS20P20-201ENST00000460498 340 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AP000797.1-201ENST00000478870 387 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.33□□□□□ -2.04
COL4A4P53420 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
COL4A4P53420 AC011352.3-201ENST00000505162 593 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AC108078.1-201ENST00000508073 725 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
COL4A4P53420 RNA5SP200-201ENST00000516360 103 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 RNU6-1308P-201ENST00000516817 103 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 DEFB131D-201ENST00000526803 184 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.33□□□□□ -2.04
COL4A4P53420 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.33□□□□□ -2.04
COL4A4P53420 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.33□□□□□ -2.04
COL4A4P53420 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.33□□□□□ -2.04
COL4A4P53420 AC105137.2-201ENST00000569073 466 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.33□□□□□ -2.04
COL4A4P53420 AL161729.4-201ENST00000604650 476 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AP001506.1-201ENST00000615444 211 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.33□□□□□ -2.04
COL4A4P53420 AL359880.1-201ENST00000621879 266 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AC231657.1-201ENST00000624313 397 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 AC116563.2-201ENST00000624751 535 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.33□□□□□ -2.04
COL4A4P53420 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A4P53420 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 MIR337-201ENST00000362281 93 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RNA5SP325-201ENST00000363756 130 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RNU6-1090P-201ENST00000364065 94 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RNU5E-5P-201ENST00000365379 116 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 Y_RNA.450-201ENST00000384198 113 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RNU6-532P-201ENST00000384318 107 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RNU6-332P-201ENST00000391193 108 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A4P53420 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.32□□□□□ -2.04
COL4A4P53420 MTCO3P12-201ENST00000416718 547 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 BX295541.1-201ENST00000417774 250 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 USP9YP13-201ENST00000417797 480 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC233728.2-201ENST00000425348 757 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A4P53420 AC004866.2-201ENST00000438285 481 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RPL18AP17-201ENST00000455326 198 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 SNRPFP4-201ENST00000456366 242 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RPS20P24-201ENST00000457473 361 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RNF138P1-201ENST00000502765 546 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A4P53420 AC022447.3-201ENST00000506865 495 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC048346.1-201ENST00000510247 144 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.32□□□□□ -2.04
COL4A4P53420 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.32□□□□□ -2.04
COL4A4P53420 MTND5P4-201ENST00000514978 288 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RNU6-1045P-201ENST00000516321 107 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.32□□□□□ -2.04
COL4A4P53420 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.32□□□□□ -2.04
COL4A4P53420 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.32□□□□□ -2.04
COL4A4P53420 AC012182.1-201ENST00000570133 895 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 RPS3AP23-202ENST00000574601 686 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 MIR5697-201ENST00000578045 78 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 MIR548Y-201ENST00000582739 110 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 MIR5002-201ENST00000584713 97 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC020895.1-201ENST00000595362 272 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC005261.5-201ENST00000596280 355 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC069304.2-201ENST00000605154 435 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC2.32□□□□□ -2.04
COL4A4P53420 AL590282.1-201ENST00000610379 1136 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A4P53420 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.32□□□□□ -2.04
COL4A4P53420 AC108479.2-201ENST00000617314 601 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 U6.107-201ENST00000637108 79 ntBASIC2.32□□□□□ -2.04
COL4A4P53420 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A4P53420 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 SNORD56.2-201ENST00000363242 71 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 Y_RNA.142-201ENST00000363491 102 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 RNU6-621P-201ENST00000364752 109 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 RNU6-877P-201ENST00000383868 107 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 RNU6-738P-201ENST00000384531 106 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 MIR16-1-201ENST00000385271 89 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 RNU6-1300P-201ENST00000391046 108 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 RNA5SP498-201ENST00000411342 120 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms