Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.92□□□□□ -1.78
SMARCA1P28370 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.92□□□□□ -1.78
SMARCA1P28370 AC022893.3-201ENST00000607665 437 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AC090132.2-201ENST00000615881 347 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.92□□□□□ -1.78
SMARCA1P28370 AC118273.1-201ENST00000525324 3006 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SMARCA1P28370 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SMARCA1P28370 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SMARCA1P28370 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SMARCA1P28370 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.91□□□□□ -1.78
SMARCA1P28370 ZNF807-201ENST00000328088 1707 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 SNORD81.2-201ENST00000365153 76 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 SNORA32.2-201ENST00000384049 122 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 RNU6-1127P-201ENST00000384580 107 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 MIR493-201ENST00000385254 89 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 RNU4-26P-201ENST00000410270 107 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 Z99755.1-201ENST00000414048 380 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.91□□□□□ -1.78
SMARCA1P28370 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.91□□□□□ -1.78
SMARCA1P28370 HMGN2P20-201ENST00000437531 273 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 SCARNA18-201ENST00000459004 134 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 RNU6-953P-201ENST00000459154 107 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 RPL21P93-201ENST00000480465 489 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 RPL7P20-201ENST00000520308 745 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.91□□□□□ -1.78
SMARCA1P28370 AC021646.1-201ENST00000605469 484 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.91□□□□□ -1.78
SMARCA1P28370 AL359547.2-201ENST00000615810 418 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.91□□□□□ -1.78
SMARCA1P28370 HSPA8P4-201ENST00000511877 1920 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SMARCA1P28370 AF117829.1-206ENST00000621883 3802 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 Z83843.1-201ENST00000604070 3685 ntBASIC3.91□□□□□ -1.78
SMARCA1P28370 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SMARCA1P28370 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SMARCA1P28370 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.9□□□□□ -1.78
SMARCA1P28370 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SMARCA1P28370 Y_RNA.142-201ENST00000363491 102 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 RNA5SP267-201ENST00000364893 126 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 Y_RNA.373-201ENST00000365600 103 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 EI24P2-201ENST00000397776 1076 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 EEF1A1P40-201ENST00000412883 573 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AL353678.1-201ENST00000422735 741 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 NDUFB4P7-201ENST00000423198 363 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 MTCO3P46-201ENST00000425787 232 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AL591212.2-201ENST00000433923 257 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.9□□□□□ -1.79
SMARCA1P28370 RPL7P12-201ENST00000446719 750 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC104058.1-201ENST00000448028 297 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 RPS15AP27-201ENST00000449183 343 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AC007547.1-201ENST00000462177 490 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 RPL7P49-201ENST00000471402 708 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 RPL7P5-201ENST00000471472 736 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 RPL31P60-201ENST00000478450 367 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 SCARNA15.2-201ENST00000516409 127 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 RNA5SP471-201ENST00000516971 106 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AC243972.3-201ENST00000539655 198 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AC004024.1-201ENST00000549244 247 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.9□□□□□ -1.79
SMARCA1P28370 MIR15A-201ENST00000607334 83 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC092807.2-201ENST00000609367 243 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 AC034102.8-201ENST00000615146 484 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.9□□□□□ -1.79
SMARCA1P28370 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.9□□□□□ -1.79
SMARCA1P28370 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.9□□□□□ -1.79
SMARCA1P28370 AL021368.2-201ENST00000606125 5352 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
SMARCA1P28370 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.9□□□□□ -1.79
SMARCA1P28370 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SMARCA1P28370 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SMARCA1P28370 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
SMARCA1P28370 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SMARCA1P28370 RNU6-831P-201ENST00000384548 107 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 AL139039.1-201ENST00000401900 692 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 AL592114.1-201ENST00000403842 483 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 RNA5SP111-201ENST00000411386 101 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 AC009161.1-201ENST00000417306 376 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 RPL35AP12-201ENST00000425362 338 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.89□□□□□ -1.79
SMARCA1P28370 MTND4LP16-201ENST00000440828 295 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 PRSS3P4-201ENST00000453323 162 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 RNU6-1208P-201ENST00000459588 107 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 AC087588.1-201ENST00000462203 316 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 AC083904.1-201ENST00000487828 231 ntBASIC3.89□□□□□ -1.79
SMARCA1P28370 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms