Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR4480-201ENST00000582492 71 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX1P28360 AC005176.2-201ENST00000596933 147 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.74□□□□□ -1.65
MSX1P28360 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.74□□□□□ -1.65
MSX1P28360 FAM25E-202ENST00000608562 189 ntBASIC4.74□□□□□ -1.65
MSX1P28360 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.74□□□□□ -1.65
MSX1P28360 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
MSX1P28360 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX1P28360 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
MSX1P28360 AL359693.1-201ENST00000614959 2407 ntBASIC4.74□□□□□ -1.65
MSX1P28360 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSX1P28360 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSX1P28360 ZNF204P-201ENST00000416749 2397 ntBASIC4.73□□□□□ -1.65
MSX1P28360 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.73□□□□□ -1.65
MSX1P28360 Y_RNA.23-201ENST00000362496 106 ntBASIC4.73□□□□□ -1.65
MSX1P28360 RN7SKP113-201ENST00000363891 295 ntBASIC4.73□□□□□ -1.65
MSX1P28360 RNU4-84P-201ENST00000364200 139 ntBASIC4.73□□□□□ -1.65
MSX1P28360 Y_RNA.319-201ENST00000365138 92 ntBASIC4.73□□□□□ -1.65
MSX1P28360 Y_RNA.357-201ENST00000365487 109 ntBASIC4.73□□□□□ -1.65
MSX1P28360 RNU6-213P-201ENST00000384051 104 ntBASIC4.73□□□□□ -1.65
MSX1P28360 SNORA29-201ENST00000384183 140 ntBASIC4.73□□□□□ -1.65
MSX1P28360 RNU6-159P-201ENST00000391080 106 ntBASIC4.73□□□□□ -1.65
MSX1P28360 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 CYP4F29P-201ENST00000420685 446 ntBASIC4.73□□□□□ -1.65
MSX1P28360 NDUFB4P7-201ENST00000423198 363 ntBASIC4.73□□□□□ -1.65
MSX1P28360 AC007919.1-201ENST00000429380 217 ntBASIC4.73□□□□□ -1.65
MSX1P28360 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 BTF3P6-201ENST00000448054 499 ntBASIC4.73□□□□□ -1.65
MSX1P28360 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX1P28360 AC022795.1-201ENST00000473808 480 ntBASIC4.73□□□□□ -1.65
MSX1P28360 NIP7P2-201ENST00000485801 544 ntBASIC4.73□□□□□ -1.65
MSX1P28360 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.73□□□□□ -1.65
MSX1P28360 RNU4-60P-201ENST00000517239 135 ntBASIC4.73□□□□□ -1.65
MSX1P28360 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.73□□□□□ -1.65
MSX1P28360 MIR3921-201ENST00000577308 85 ntBASIC4.73□□□□□ -1.65
MSX1P28360 MIR3934-201ENST00000579806 107 ntBASIC4.73□□□□□ -1.65
MSX1P28360 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.73□□□□□ -1.65
MSX1P28360 snoU18.1-201ENST00000629629 71 ntBASIC4.73□□□□□ -1.65
MSX1P28360 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
MSX1P28360 SMG1P6-201ENST00000532337 2930 ntBASIC4.73□□□□□ -1.65
MSX1P28360 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.72□□□□□ -1.65
MSX1P28360 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.72□□□□□ -1.65
MSX1P28360 AC000123.3-201ENST00000624029 4975 ntBASIC4.72□□□□□ -1.65
MSX1P28360 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.72□□□□□ -1.65
MSX1P28360 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
MSX1P28360 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
MSX1P28360 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
MSX1P28360 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX1P28360 Y_RNA.7-201ENST00000362352 102 ntBASIC4.72□□□□□ -1.65
MSX1P28360 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 RNU2-68P-201ENST00000410878 191 ntBASIC4.72□□□□□ -1.65
MSX1P28360 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.72□□□□□ -1.65
MSX1P28360 AL356867.1-201ENST00000429623 299 ntBASIC4.72□□□□□ -1.65
MSX1P28360 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.72□□□□□ -1.65
MSX1P28360 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.72□□□□□ -1.65
MSX1P28360 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX1P28360 AC005042.3-201ENST00000453230 174 ntBASIC4.72□□□□□ -1.65
MSX1P28360 AC009127.1-201ENST00000467090 155 ntBASIC4.72□□□□□ -1.65
MSX1P28360 RPS4XP22-201ENST00000480755 780 ntBASIC4.72□□□□□ -1.65
MSX1P28360 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.72□□□□□ -1.65
MSX1P28360 SNORA43.2-201ENST00000516652 128 ntBASIC4.72□□□□□ -1.65
MSX1P28360 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX1P28360 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX1P28360 MIR3684-201ENST00000579779 74 ntBASIC4.72□□□□□ -1.65
MSX1P28360 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.72□□□□□ -1.65
MSX1P28360 AC024153.1-201ENST00000603103 365 ntBASIC4.72□□□□□ -1.65
MSX1P28360 AC022441.3-201ENST00000605737 136 ntBASIC4.72□□□□□ -1.65
MSX1P28360 Y_RNA.778-201ENST00000620203 90 ntBASIC4.72□□□□□ -1.65
MSX1P28360 AC091953.3-201ENST00000623220 236 ntBASIC4.72□□□□□ -1.65
MSX1P28360 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.72□□□□□ -1.65
MSX1P28360 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSX1P28360 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
MSX1P28360 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.65
MSX1P28360 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.71□□□□□ -1.65
MSX1P28360 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
MSX1P28360 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.65
MSX1P28360 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX1P28360 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.71□□□□□ -1.66
MSX1P28360 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.71□□□□□ -1.66
MSX1P28360 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSX1P28360 Y_RNA.238-201ENST00000364441 102 ntBASIC4.71□□□□□ -1.66
MSX1P28360 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX1P28360 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX1P28360 U8.10-201ENST00000384260 133 ntBASIC4.71□□□□□ -1.66
MSX1P28360 MIR569-201ENST00000385228 96 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms