Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
RFX1P22670 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.14□□□□□ -1.59
RFX1P22670 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.14□□□□□ -1.59
RFX1P22670 SRP72P2-201ENST00000344851 1979 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
RFX1P22670 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RFX1P22670 AC027290.2-201ENST00000623210 18662 ntBASIC5.13□□□□□ -1.59
RFX1P22670 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
RFX1P22670 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RFX1P22670 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
RFX1P22670 Y_RNA.288-201ENST00000364854 92 ntBASIC5.13□□□□□ -1.59
RFX1P22670 Z98749.2-208ENST00000381646 500 ntBASIC5.13□□□□□ -1.59
RFX1P22670 MIR518D-201ENST00000385014 87 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AL590762.2-201ENST00000395798 571 ntBASIC5.13□□□□□ -1.59
RFX1P22670 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RFX1P22670 AP000275.1-201ENST00000411943 390 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AL645608.4-201ENST00000423619 154 ntBASIC5.13□□□□□ -1.59
RFX1P22670 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.13□□□□□ -1.59
RFX1P22670 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC5.13□□□□□ -1.59
RFX1P22670 AL132838.2-201ENST00000492041 314 ntBASIC5.13□□□□□ -1.59
RFX1P22670 RNU1-103P-201ENST00000516502 125 ntBASIC5.13□□□□□ -1.59
RFX1P22670 IGHV3-76-201ENST00000522465 295 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AP004607.1-201ENST00000524456 203 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC5.13□□□□□ -1.59
RFX1P22670 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.13□□□□□ -1.59
RFX1P22670 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.13□□□□□ -1.59
RFX1P22670 AC093249.4-201ENST00000564755 259 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AC104581.2-201ENST00000572227 430 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.13□□□□□ -1.59
RFX1P22670 RPS29P30-201ENST00000600975 111 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC5.13□□□□□ -1.59
RFX1P22670 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC5.13□□□□□ -1.59
RFX1P22670 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.13□□□□□ -1.59
RFX1P22670 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
RFX1P22670 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
RFX1P22670 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RFX1P22670 AC233263.6-201ENST00000631132 1963 ntBASIC5.13□□□□□ -1.59
RFX1P22670 AL133412.1-201ENST00000380194 2992 ntBASIC5.13□□□□□ -1.59
RFX1P22670 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
RFX1P22670 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.12□□□□□ -1.59
RFX1P22670 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
RFX1P22670 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
RFX1P22670 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
RFX1P22670 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC5.12□□□□□ -1.59
RFX1P22670 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 RNU6-105P-201ENST00000363909 104 ntBASIC5.12□□□□□ -1.59
RFX1P22670 DEFB109C-201ENST00000382575 264 ntBASIC5.12□□□□□ -1.59
RFX1P22670 DEFB109B-201ENST00000382656 264 ntBASIC5.12□□□□□ -1.59
RFX1P22670 Y_RNA.489-201ENST00000384410 101 ntBASIC5.12□□□□□ -1.59
RFX1P22670 MIR888-201ENST00000401186 77 ntBASIC5.12□□□□□ -1.59
RFX1P22670 Y_RNA.592-201ENST00000410274 109 ntBASIC5.12□□□□□ -1.59
RFX1P22670 BX510359.2-201ENST00000417920 305 ntBASIC5.12□□□□□ -1.59
RFX1P22670 TRAPPC2P4-201ENST00000421750 331 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.12□□□□□ -1.59
RFX1P22670 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.12□□□□□ -1.59
RFX1P22670 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 RPL12P20-201ENST00000475538 479 ntBASIC5.12□□□□□ -1.59
RFX1P22670 RNU2-53P-201ENST00000516257 147 ntBASIC5.12□□□□□ -1.59
RFX1P22670 RNU6-388P-201ENST00000517012 105 ntBASIC5.12□□□□□ -1.59
RFX1P22670 RNU6-389P-201ENST00000517048 105 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AC134698.5-201ENST00000519444 336 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AC091144.1-201ENST00000519573 138 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.12□□□□□ -1.59
RFX1P22670 MIR4715-201ENST00000584117 79 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AC078899.3-201ENST00000599065 212 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AC012468.1-201ENST00000604888 430 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AC064801.1-201ENST00000612025 407 ntBASIC5.12□□□□□ -1.59
RFX1P22670 AC068724.3-201ENST00000625906 87 ntBASIC5.12□□□□□ -1.59
RFX1P22670 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.12□□□□□ -1.59
RFX1P22670 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RFX1P22670 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.12□□□□□ -1.59
RFX1P22670 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RFX1P22670 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RFX1P22670 MFSD8-216ENST00000641147 4009 ntBASIC5.11□□□□□ -1.59
RFX1P22670 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.11□□□□□ -1.59
RFX1P22670 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RFX1P22670 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
RFX1P22670 AC098831.1-201ENST00000440661 216 ntBASIC5.11□□□□□ -1.59
RFX1P22670 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.11□□□□□ -1.59
RFX1P22670 SNORA43.2-201ENST00000516652 128 ntBASIC5.11□□□□□ -1.59
RFX1P22670 SNORA31.18-201ENST00000517043 134 ntBASIC5.11□□□□□ -1.59
RFX1P22670 AC109329.1-201ENST00000518744 317 ntBASIC5.11□□□□□ -1.59
RFX1P22670 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.11□□□□□ -1.59
RFX1P22670 AC133555.2-201ENST00000550213 292 ntBASIC5.11□□□□□ -1.59
RFX1P22670 AMZ2P1-203ENST00000565833 850 ntBASIC5.11□□□□□ -1.59
RFX1P22670 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.11□□□□□ -1.59
RFX1P22670 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC5.11□□□□□ -1.59
RFX1P22670 AC005357.1-201ENST00000588399 301 ntBASIC5.11□□□□□ -1.59
RFX1P22670 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.11□□□□□ -1.59
RFX1P22670 MIR6853-201ENST00000619642 74 ntBASIC5.11□□□□□ -1.59
RFX1P22670 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.11□□□□□ -1.59
RFX1P22670 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
RFX1P22670 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
RFX1P22670 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms