Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A1P12109 AL137003.2-201ENST00000606924 2538 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A1P12109 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A1P12109 RNU6-1040P-201ENST00000383974 107 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 RNU6-1127P-201ENST00000384580 107 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 MIR450B-201ENST00000401182 78 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 ATP5A1P2-201ENST00000412323 255 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.31□□□□□ -1.72
COL6A1P12109 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AC093106.2-201ENST00000428212 385 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.31□□□□□ -1.72
COL6A1P12109 AC108059.2-201ENST00000434626 151 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 SETP5-201ENST00000437270 562 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A1P12109 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.31□□□□□ -1.72
COL6A1P12109 MIR2053-201ENST00000459295 91 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 RPL21P11-201ENST00000461458 483 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AC008481.1-201ENST00000463278 396 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 RN7SL601P-201ENST00000471221 293 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 RPL21P93-201ENST00000480465 489 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.31□□□□□ -1.72
COL6A1P12109 AP003122.3-201ENST00000526316 255 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A1P12109 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.31□□□□□ -1.72
COL6A1P12109 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A1P12109 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.31□□□□□ -1.72
COL6A1P12109 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A1P12109 MIR3941-201ENST00000582572 103 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AC008521.1-201ENST00000587471 187 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A1P12109 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AL589994.2-201ENST00000621124 579 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AC022418.1-201ENST00000624118 445 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 SCARNA15.3-201ENST00000626315 122 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 SCARNA4.1-201ENST00000628597 123 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.31□□□□□ -1.72
COL6A1P12109 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
COL6A1P12109 ZNF962P-201ENST00000443465 3140 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 ZNF519P1-201ENST00000449011 1626 ntBASIC4.31□□□□□ -1.72
COL6A1P12109 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A1P12109 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A1P12109 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A1P12109 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL6A1P12109 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A1P12109 Y_RNA.135-201ENST00000363439 95 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 Y_RNA.148-201ENST00000363557 117 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 Y_RNA.158-201ENST00000363651 101 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 RNU6-946P-201ENST00000383878 107 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 RNU6-310P-201ENST00000384655 107 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 MIR1251-201ENST00000408552 70 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 RPS12P24-201ENST00000412619 387 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.3□□□□□ -1.72
COL6A1P12109 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.3□□□□□ -1.72
COL6A1P12109 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.3□□□□□ -1.72
COL6A1P12109 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.3□□□□□ -1.72
COL6A1P12109 HMGN2P20-201ENST00000437531 273 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 AC004866.2-201ENST00000438285 481 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 AC069285.2-201ENST00000440210 275 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 AL049873.1-201ENST00000480540 376 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 VN1R104P-201ENST00000505115 1009 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.3□□□□□ -1.72
COL6A1P12109 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.3□□□□□ -1.72
COL6A1P12109 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.3□□□□□ -1.72
COL6A1P12109 MIR4513-201ENST00000581077 86 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 MIR3149-201ENST00000584629 83 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 AL670379.4-201ENST00000605279 254 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 AL138726.1-201ENST00000614873 333 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 ATP5A1P2-202ENST00000616464 443 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 PISRT1.1-201ENST00000616930 107 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 AL669831.3-213ENST00000636676 183 ntBASIC4.3□□□□□ -1.72
COL6A1P12109 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A1P12109 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.3□□□□□ -1.72
COL6A1P12109 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL6A1P12109 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.29□□□□□ -1.72
COL6A1P12109 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
COL6A1P12109 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
COL6A1P12109 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.29□□□□□ -1.72
COL6A1P12109 RNU6-562P-201ENST00000362731 107 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 SNORD3E-201ENST00000362899 217 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 Y_RNA.452-201ENST00000384202 108 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 RNU6-331P-201ENST00000384724 107 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 MIR591-201ENST00000385290 95 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AL591034.1-201ENST00000407447 340 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 RNU6-985P-201ENST00000410182 104 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 BX682237.1-201ENST00000415016 335 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.29□□□□□ -1.72
COL6A1P12109 MTCYBP9-201ENST00000431021 303 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AC083863.1-201ENST00000438811 231 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.29□□□□□ -1.72
COL6A1P12109 FABP5P13-201ENST00000452144 328 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 RPL32P34-201ENST00000486380 400 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.29□□□□□ -1.72
COL6A1P12109 RBBP4P6-201ENST00000508098 202 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 RNU6-1016P-201ENST00000516689 94 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 RANP9-201ENST00000519957 271 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AC023442.1-201ENST00000531247 422 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms