Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ATP5A1P2-202ENST00000616464 443 ntBASIC2.79□□□□□ -1.96
SIX3O95343 Z99129.2-201ENST00000619967 314 ntBASIC2.79□□□□□ -1.96
SIX3O95343 AC010338.1-201ENST00000621823 717 ntBASIC2.79□□□□□ -1.96
SIX3O95343 U2.21-201ENST00000637295 81 ntBASIC2.79□□□□□ -1.96
SIX3O95343 AC099654.13-201ENST00000639774 207 ntBASIC2.79□□□□□ -1.96
SIX3O95343 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.79□□□□□ -1.96
SIX3O95343 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.79□□□□□ -1.96
SIX3O95343 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
SIX3O95343 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.79□□□□□ -1.96
SIX3O95343 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SIX3O95343 AL355596.1-201ENST00000565399 3996 ntBASIC2.78□□□□□ -1.96
SIX3O95343 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.78□□□□□ -1.96
SIX3O95343 AC131280.1-202ENST00000624067 4211 ntBASIC2.78□□□□□ -1.96
SIX3O95343 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.78□□□□□ -1.96
SIX3O95343 AC092593.1-201ENST00000515413 1815 ntBASIC2.78□□□□□ -1.96
SIX3O95343 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
SIX3O95343 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SIX3O95343 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SIX3O95343 RNU1-140P-201ENST00000365040 165 ntBASIC2.78□□□□□ -1.96
SIX3O95343 Y_RNA.466-201ENST00000384294 113 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RNU6-39P-201ENST00000384344 107 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RNY3P9-201ENST00000384727 106 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RPL21P75-201ENST00000396599 483 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RPL21P28-201ENST00000401418 483 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AL592114.1-201ENST00000403842 483 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RNA5SP111-201ENST00000411386 101 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.78□□□□□ -1.96
SIX3O95343 MTND1P26-201ENST00000440488 538 ntBASIC2.78□□□□□ -1.96
SIX3O95343 MTND6P13-201ENST00000443510 523 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AL136380.1-201ENST00000447970 162 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AL590639.1-201ENST00000456484 337 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AL441985.1-201ENST00000457727 251 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RPL21P39-201ENST00000463605 483 ntBASIC2.78□□□□□ -1.96
SIX3O95343 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.78□□□□□ -1.96
SIX3O95343 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.78□□□□□ -1.96
SIX3O95343 RPL21P93-201ENST00000480465 489 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC087190.1-201ENST00000484462 480 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC093591.1-201ENST00000491435 481 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RPL21P16-201ENST00000495531 483 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.78□□□□□ -1.96
SIX3O95343 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.78□□□□□ -1.96
SIX3O95343 RNU6-572P-201ENST00000516724 80 ntBASIC2.78□□□□□ -1.96
SIX3O95343 RNU2-46P-201ENST00000517038 113 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC060788.1-201ENST00000521318 469 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.78□□□□□ -1.96
SIX3O95343 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.78□□□□□ -1.96
SIX3O95343 AC021739.1-201ENST00000559631 174 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.78□□□□□ -1.96
SIX3O95343 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.78□□□□□ -1.96
SIX3O95343 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.78□□□□□ -1.96
SIX3O95343 NRBF2P5-201ENST00000603087 788 ntBASIC2.78□□□□□ -1.96
SIX3O95343 Z99497.2-201ENST00000603634 310 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC093732.2-201ENST00000607950 274 ntBASIC2.78□□□□□ -1.96
SIX3O95343 AC069234.5-201ENST00000611056 416 ntBASIC2.78□□□□□ -1.96
SIX3O95343 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
SIX3O95343 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.78□□□□□ -1.96
SIX3O95343 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
SIX3O95343 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.77□□□□□ -1.97
SIX3O95343 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.77□□□□□ -1.97
SIX3O95343 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SIX3O95343 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
SIX3O95343 FGF7P2-201ENST00000332473 296 ntBASIC2.77□□□□□ -1.97
SIX3O95343 MIR422A-201ENST00000362286 90 ntBASIC2.77□□□□□ -1.97
SIX3O95343 Y_RNA.40-201ENST00000362645 93 ntBASIC2.77□□□□□ -1.97
SIX3O95343 RNU4-21P-201ENST00000362802 126 ntBASIC2.77□□□□□ -1.97
SIX3O95343 Y_RNA.201-201ENST00000364052 96 ntBASIC2.77□□□□□ -1.97
SIX3O95343 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
SIX3O95343 RNU6-1025P-201ENST00000410629 104 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.77□□□□□ -1.97
SIX3O95343 AC009518.2-201ENST00000418056 731 ntBASIC2.77□□□□□ -1.97
SIX3O95343 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.77□□□□□ -1.97
SIX3O95343 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.77□□□□□ -1.97
SIX3O95343 TOMM20P4-201ENST00000427861 435 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AC104850.1-201ENST00000435940 476 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AL161651.1-201ENST00000440882 223 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.77□□□□□ -1.97
SIX3O95343 NIPA2P5-201ENST00000452282 464 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AC003982.1-202ENST00000469928 248 ntBASIC2.77□□□□□ -1.97
SIX3O95343 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.77□□□□□ -1.97
SIX3O95343 AC026801.1-201ENST00000497178 464 ntBASIC2.77□□□□□ -1.97
SIX3O95343 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.77□□□□□ -1.97
SIX3O95343 AC098591.2-201ENST00000510152 315 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AC108078.2-201ENST00000510750 236 ntBASIC2.77□□□□□ -1.97
SIX3O95343 SCGB1D5P-201ENST00000515134 247 ntBASIC2.77□□□□□ -1.97
SIX3O95343 SCARNA17.1-201ENST00000516211 143 ntBASIC2.77□□□□□ -1.97
SIX3O95343 SCARNA17.2-201ENST00000516334 143 ntBASIC2.77□□□□□ -1.97
SIX3O95343 RNU6-1315P-201ENST00000517187 99 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AC025755.1-201ENST00000521306 278 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.77□□□□□ -1.97
SIX3O95343 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.77□□□□□ -1.97
SIX3O95343 AC091544.4-201ENST00000555268 342 ntBASIC2.77□□□□□ -1.97
SIX3O95343 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.77□□□□□ -1.97
SIX3O95343 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.77□□□□□ -1.97
SIX3O95343 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.77□□□□□ -1.97
SIX3O95343 SCARNA17.4-201ENST00000614296 143 ntBASIC2.77□□□□□ -1.97
SIX3O95343 AP001506.1-201ENST00000615444 211 ntBASIC2.77□□□□□ -1.97
SIX3O95343 IGHVIII-44-202ENST00000636235 289 ntBASIC2.77□□□□□ -1.97
SIX3O95343 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
SIX3O95343 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SIX3O95343 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms