Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MIR218-1-201ENST00000384999 110 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 MIR17-201ENST00000385012 84 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 Y_RNA.578-201ENST00000390903 88 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AL356421.1-201ENST00000403255 413 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 RN7SKP32-201ENST00000410167 303 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC1.86□□□□□ -2.11
SHOX2O60902 AL109913.1-201ENST00000421173 514 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 RPS3AP44-201ENST00000425466 790 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 ELOCP14-201ENST00000428070 331 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 ELOCP7-201ENST00000439968 331 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AC096638.1-201ENST00000444678 216 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 AC068587.2-201ENST00000478386 781 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.86□□□□□ -2.11
SHOX2O60902 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.86□□□□□ -2.11
SHOX2O60902 AL136520.1-202ENST00000555494 763 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC1.86□□□□□ -2.11
SHOX2O60902 AF038458.1-201ENST00000588406 262 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.86□□□□□ -2.11
SHOX2O60902 AL355598.1-201ENST00000604169 202 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AC004805.2-201ENST00000605382 482 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AC093673.2-201ENST00000609674 331 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 U4atac.1-201ENST00000618345 95 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 AP000943.4-201ENST00000622912 357 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.86□□□□□ -2.11
SHOX2O60902 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.86□□□□□ -2.11
SHOX2O60902 AC110994.2-201ENST00000635481 492 ntBASIC1.86□□□□□ -2.11
SHOX2O60902 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.85□□□□□ -2.11
SHOX2O60902 RNU6-486P-201ENST00000363116 107 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 RNU6-778P-201ENST00000363269 103 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 snoZ40.1-201ENST00000364540 72 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 Y_RNA.295-201ENST00000364918 102 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 RNA5SP363-201ENST00000365072 115 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 MTND4P3-201ENST00000417829 541 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.85□□□□□ -2.11
SHOX2O60902 EIF1AXP1-201ENST00000419267 435 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AC013262.1-201ENST00000426710 252 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 NANOGP2-201ENST00000435391 727 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 COX7BP2-201ENST00000437976 242 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.85□□□□□ -2.11
SHOX2O60902 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.85□□□□□ -2.11
SHOX2O60902 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
SHOX2O60902 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.85□□□□□ -2.11
SHOX2O60902 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.85□□□□□ -2.11
SHOX2O60902 MTND5P13-201ENST00000513046 1079 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.85□□□□□ -2.11
SHOX2O60902 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.85□□□□□ -2.11
SHOX2O60902 AC023825.1-201ENST00000566704 1030 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 MIR4765-201ENST00000585007 77 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AC078899.2-201ENST00000595282 212 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.85□□□□□ -2.11
SHOX2O60902 AC009237.15-201ENST00000610252 501 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AC005296.1-201ENST00000616145 209 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AL136981.2-201ENST00000617319 734 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AC012150.2-201ENST00000621300 544 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AC079416.3-201ENST00000624479 549 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 AL390862.1-201ENST00000635467 1469 ntBASIC1.85□□□□□ -2.11
SHOX2O60902 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.85□□□□□ -2.11
SHOX2O60902 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SHOX2O60902 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SHOX2O60902 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
SHOX2O60902 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
SHOX2O60902 CIR1P3-201ENST00000405137 479 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 RNU2-20P-201ENST00000410425 191 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 RN7SKP158-201ENST00000410453 326 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 RNA5SP270-201ENST00000411361 118 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 TIMM9P2-201ENST00000419324 266 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 PGBD4P6-201ENST00000421501 610 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 SKA2P1-201ENST00000425592 390 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 MTND1P28-201ENST00000435623 950 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.84□□□□□ -2.11
SHOX2O60902 MTND5P14-201ENST00000441481 1267 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 MTCO3P45-201ENST00000443036 613 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AC007677.1-201ENST00000445757 515 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.84□□□□□ -2.11
SHOX2O60902 RNA5SP233-201ENST00000459153 113 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.84□□□□□ -2.11
SHOX2O60902 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.84□□□□□ -2.11
SHOX2O60902 AC093281.2-201ENST00000510153 597 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.84□□□□□ -2.11
SHOX2O60902 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.84□□□□□ -2.11
SHOX2O60902 AC135279.1-201ENST00000543493 504 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SHOX2O60902 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.84□□□□□ -2.11
SHOX2O60902 AC126365.2-201ENST00000580630 379 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AC008507.2-201ENST00000588402 1176 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.84□□□□□ -2.11
SHOX2O60902 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.84□□□□□ -2.11
SHOX2O60902 AL359821.1-201ENST00000605519 182 ntBASIC1.84□□□□□ -2.11
SHOX2O60902 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
SHOX2O60902 AC011477.1-204ENST00000623416 1325 ntBASIC1.84□□□□□ -2.12
SHOX2O60902 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
SHOX2O60902 AL359854.1-201ENST00000614203 1594 ntBASIC1.84□□□□□ -2.12
SHOX2O60902 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms