Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AC027287.1-201ENST00000553115 1453 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AL022322.2-201ENST00000624072 20397 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 RNU6-97P-201ENST00000363387 104 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 RNU6-343P-201ENST00000364709 104 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.414-201ENST00000384011 101 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 RNU6-606P-201ENST00000384721 111 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 RNU6-1093P-201ENST00000391194 107 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AC011816.1-201ENST00000441346 546 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AC005297.2-201ENST00000450430 606 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AC087879.1-201ENST00000474343 374 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 RPL21P99-201ENST00000480369 423 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AC025445.1-201ENST00000502728 300 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 IGHV3-76-201ENST00000522465 295 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AC090877.1-201ENST00000561418 344 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 AC092608.2-201ENST00000624427 218 ntBASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL17A1Q9UMD9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AC009313.2-201ENST00000417893 1941 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 OR56A5-201ENST00000340110 738 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU6-212P-201ENST00000362642 104 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.152-201ENST00000363578 100 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU4-1-201ENST00000363925 141 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNY4P16-201ENST00000364768 94 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU6-996P-201ENST00000365438 107 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU6-890P-201ENST00000384121 107 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 MIR514A2-201ENST00000385131 88 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 MIR514A3-201ENST00000385132 88 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU6-493P-201ENST00000391321 108 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AL139397.2-201ENST00000404529 772 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU2-36P-201ENST00000410361 191 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU6-954P-201ENST00000411355 107 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RPL31P45-201ENST00000419532 356 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RPL36P19-201ENST00000430744 301 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RPL23AP30-201ENST00000432419 501 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RPS15AP10-201ENST00000432472 382 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 ELOCP18-201ENST00000434209 337 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AF228730.2-201ENST00000438784 848 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AL591623.2-201ENST00000449978 222 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU7-51P-201ENST00000516560 62 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 RNU6-566P-201ENST00000516790 107 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 MIR3146-201ENST00000580367 79 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AC009779.6-201ENST00000603972 165 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 DUSP12P1-201ENST00000612874 516 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 U2.14-201ENST00000615943 113 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 AL669831.3-213ENST00000636676 183 ntBASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL17A1Q9UMD9 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 MIR422A-201ENST00000362286 90 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RNU5B-2P-201ENST00000363036 113 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RNU6-280P-201ENST00000364145 104 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.274-201ENST00000364714 101 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RNU1-140P-201ENST00000365040 165 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.376-201ENST00000365638 108 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 SNORA75B-201ENST00000384053 137 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 MIR92A2-201ENST00000385299 75 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RNU2-14P-201ENST00000411053 191 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC063979.1-201ENST00000415539 377 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC007283.2-201ENST00000424739 197 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AL031736.2-201ENST00000426573 787 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RPS27P27-201ENST00000498779 255 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RNA5SP356-201ENST00000515972 94 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RNA5SP337-201ENST00000517007 109 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC011979.2-201ENST00000527568 352 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AL021879.1-201ENST00000611756 288 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC011890.2-201ENST00000613393 294 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms