Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.53□□□□□ -2
LHX3Q9UBR4 RNU6-750P-201ENST00000390946 107 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.53□□□□□ -2
LHX3Q9UBR4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.53□□□□□ -2
LHX3Q9UBR4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.53□□□□□ -2
LHX3Q9UBR4 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.53□□□□□ -2
LHX3Q9UBR4 AC098831.1-201ENST00000440661 216 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.53□□□□□ -2
LHX3Q9UBR4 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.53□□□□□ -2
LHX3Q9UBR4 UBBP3-201ENST00000445497 241 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.53□□□□□ -2
LHX3Q9UBR4 MTCO2P29-201ENST00000465212 189 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 AC133134.1-201ENST00000466800 359 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 MTND1P3-201ENST00000484956 952 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.53□□□□□ -2
LHX3Q9UBR4 RNA5SP337-201ENST00000517007 109 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 AC109329.2-201ENST00000519658 482 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 RPL7P20-201ENST00000520308 745 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.53□□□□□ -2
LHX3Q9UBR4 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.53□□□□□ -2
LHX3Q9UBR4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.53□□□□□ -2
LHX3Q9UBR4 MIR5092-201ENST00000583139 88 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.53□□□□□ -2
LHX3Q9UBR4 AL365204.3-201ENST00000612448 685 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LHX3Q9UBR4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.53□□□□□ -2.01
LHX3Q9UBR4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 Y_RNA.500-201ENST00000384466 111 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 Y_RNA.598-201ENST00000410480 95 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 RPS12P24-201ENST00000412619 387 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AL589872.1-201ENST00000426602 288 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC093106.2-201ENST00000428212 385 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 CETN4P-201ENST00000432407 469 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC128713.1-201ENST00000471495 306 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 MTND3P7-201ENST00000474435 343 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 BET1P1-201ENST00000482276 359 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 FABP5P5-201ENST00000515537 406 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 RNU7-51P-201ENST00000516560 62 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AP003467.2-201ENST00000520175 319 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 HMGN1P30-201ENST00000589286 268 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC174048.1-201ENST00000603389 144 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 AC007621.1-201ENST00000604544 437 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 U4.3-201ENST00000621047 82 ntBASIC2.52□□□□□ -2.01
LHX3Q9UBR4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC007336.1-201ENST00000576365 3828 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 HSPE1P11-201ENST00000339579 310 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 MIR449A-201ENST00000362113 91 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 RNA5SP456-201ENST00000364002 114 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 RNU6-1180P-201ENST00000364935 107 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 U8.9-201ENST00000365667 134 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 RNU6-946P-201ENST00000383878 107 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 MIR627-201ENST00000384979 97 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 FO393413.1-201ENST00000402892 195 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC096649.2-201ENST00000416186 393 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AL353729.1-201ENST00000425044 720 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AL592045.1-201ENST00000429867 352 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 MTATP6P7-201ENST00000453315 681 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 SNRPFP4-201ENST00000456366 242 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC026801.1-201ENST00000497178 464 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 NDUFB4P2-201ENST00000509515 391 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 RNU6-677P-201ENST00000516914 101 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 RNU6-703P-201ENST00000516946 107 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC060788.1-201ENST00000521318 469 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AP003122.4-201ENST00000530980 758 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 AC007834.2-201ENST00000536310 343 ntBASIC2.51□□□□□ -2.01
LHX3Q9UBR4 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LHX3Q9UBR4 RPL21P5-201ENST00000554662 472 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms