Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NANOGP2-201ENST00000435391 727 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC42Q96M95 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC42Q96M95 AC010468.3-201ENST00000508225 458 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 AC008837.1-201ENST00000511513 412 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 SNORA4.4-201ENST00000515921 135 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 RNA5SP61-201ENST00000516453 100 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.55□□□□□ -2.16
CCDC42Q96M95 MIR4789-201ENST00000577469 82 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 MIR4513-201ENST00000581077 86 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 AC009974.1-201ENST00000608881 455 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 AC091953.2-201ENST00000623979 160 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 AC079416.3-201ENST00000624479 549 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 WWP1P1-201ENST00000466609 2769 ntBASIC1.55□□□□□ -2.16
CCDC42Q96M95 Y_RNA.25-201ENST00000362528 102 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 RNU1-62P-201ENST00000362599 164 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 RNU6-1078P-201ENST00000364522 103 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 SNORA67.6-201ENST00000391093 99 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 AC027644.1-201ENST00000419595 298 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 AL160275.3-201ENST00000423876 471 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC42Q96M95 CKS1BP2-201ENST00000497342 240 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 FAM92A1P2-202ENST00000504766 877 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 SNORA31.24-201ENST00000517232 57 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.54□□□□□ -2.16
CCDC42Q96M95 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 AP001189.2-201ENST00000527320 189 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 GNAI2P1-201ENST00000541815 315 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC42Q96M95 ZNF92P2-201ENST00000600543 1059 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 SEPT7P9-203ENST00000604116 343 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC42Q96M95 AC011939.3-201ENST00000613686 466 ntBASIC1.54□□□□□ -2.16
CCDC42Q96M95 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC42Q96M95 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC42Q96M95 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
CCDC42Q96M95 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC42Q96M95 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 RNA5SP212-201ENST00000391223 107 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 SNORA26.9-201ENST00000391322 122 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 PTGES3P4-201ENST00000426243 356 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 MTND1P28-201ENST00000435623 950 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 HMGB1P18-201ENST00000438801 619 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 Z75746.1-201ENST00000440243 2080 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 AL161788.1-201ENST00000441805 169 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 SNRPGP13-201ENST00000442212 177 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC007677.1-201ENST00000445757 515 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 HSPE1P24-201ENST00000450782 238 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 OFD1P7Y-201ENST00000454643 1155 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC008481.1-201ENST00000463278 396 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC018437.1-201ENST00000492214 406 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC023632.1-201ENST00000518463 375 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 MTCO2P15-201ENST00000532655 656 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC42Q96M95 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC42Q96M95 AP001542.2-201ENST00000593141 364 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 BNIP3P25-201ENST00000596023 559 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 BNIP3P23-201ENST00000599655 511 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 OR4H6P-202ENST00000603819 340 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 AF129408.1-201ENST00000608767 431 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 MIR7974-201ENST00000615835 79 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 AC253576.2-201ENST00000618815 580 ntBASIC1.53□□□□□ -2.16
CCDC42Q96M95 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 MIR16-2-201ENST00000362117 81 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 U8.1-201ENST00000362843 134 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 Y_RNA.234-201ENST00000364409 97 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 Y_RNA.245-201ENST00000364493 95 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 RPL17P50-201ENST00000396131 546 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 RNU6-955P-201ENST00000410497 104 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 RSU1P2-202ENST00000437884 485 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 AC013267.1-201ENST00000458227 267 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 snoU13.8-201ENST00000458890 104 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 AC008834.1-201ENST00000511612 175 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 AP005597.4-201ENST00000526762 229 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 AC022254.1-201ENST00000567857 235 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 AC138915.2-201ENST00000569776 97 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 MIR4713-201ENST00000582691 75 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 AL139344.1-201ENST00000605228 195 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 Z99571.1-201ENST00000636677 394 ntBASIC1.52□□□□□ -2.17
CCDC42Q96M95 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.52□□□□□ -2.17
CCDC42Q96M95 MIR126-201ENST00000362291 85 ntBASIC1.51□□□□□ -2.17
CCDC42Q96M95 RNU6-216P-201ENST00000363282 104 ntBASIC1.51□□□□□ -2.17
CCDC42Q96M95 RNU6-359P-201ENST00000365466 108 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms