Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC109486.1-201ENST00000486833 374 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC097462.2-201ENST00000504623 481 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC114786.4-201ENST00000508771 728 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 RN7SKP24-201ENST00000515888 284 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 SCARNA17.1-201ENST00000516211 143 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 SCARNA17.2-201ENST00000516334 143 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 RNA5SP24-201ENST00000516478 95 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 RNU6-232P-201ENST00000517144 64 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 PCMTD1P2-201ENST00000565017 355 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC007336.1-201ENST00000576365 3828 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 MIR3616-201ENST00000584070 92 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AL355877.2-201ENST00000603670 358 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC138749.5-201ENST00000611461 208 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 SCARNA17.4-201ENST00000614296 143 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC116165.2-201ENST00000616705 206 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC006338.1-201ENST00000618453 749 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC120349.3-201ENST00000624377 529 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AL137790.1-201ENST00000634283 177 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 ZNF658B-202ENST00000615961 3375 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 SNORA38-201ENST00000363946 132 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 Y_RNA.245-201ENST00000364493 95 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 RNU6-7-201ENST00000364784 107 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 RNU6-8-201ENST00000365467 107 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 RNU5E-6P-201ENST00000365574 115 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 Z98749.2-208ENST00000381646 500 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AL359511.1-201ENST00000402970 211 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC092809.3-201ENST00000415453 231 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC007283.2-201ENST00000424739 197 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AL356583.2-201ENST00000426536 280 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 MTCYBP39-201ENST00000437562 491 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AL513328.1-201ENST00000446460 224 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC108059.3-201ENST00000456388 214 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 RPL30P6-201ENST00000475925 342 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 RPL23AP41-201ENST00000484754 458 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 RNU6-703P-201ENST00000516946 107 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 RNU6-1220P-201ENST00000517126 108 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 MTND4LP18-201ENST00000526864 291 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AP000889.2-201ENST00000532684 490 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC105137.2-201ENST00000569073 466 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 MIR3915-201ENST00000578518 97 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC012065.4-201ENST00000602445 679 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AP001981.2-201ENST00000603241 418 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC063944.3-201ENST00000609969 533 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 AC135507.2-201ENST00000612443 309 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 MIR1291-201ENST00000627649 87 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 MIR7515-201ENST00000637837 67 ntBASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.11□□□□□ -2.07
CCDC54Q8NEL0 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 U3.37-201ENST00000408528 213 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 RPS15AP5-201ENST00000436276 388 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 BZW1P2-201ENST00000473537 826 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AP000797.1-201ENST00000478870 387 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC098591.2-201ENST00000510152 315 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 RNA5SP337-201ENST00000517007 109 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC009902.1-201ENST00000519351 183 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC022634.1-201ENST00000520765 532 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC060788.1-201ENST00000521318 469 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 RPS3AP4-201ENST00000555161 764 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC023824.2-201ENST00000566185 400 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC012414.6-201ENST00000568241 401 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC005261.5-201ENST00000596280 355 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AL031775.1-201ENST00000607014 887 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 AP003485.2-201ENST00000623636 610 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC54Q8NEL0 MTND4P35-201ENST00000604257 1375 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms