Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 AC027287.1-201ENST00000553115 1453 ntBASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 MTCO1P24-201ENST00000515438 1558 ntBASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USHBP1Q8N6Y0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 Y_RNA.463-201ENST00000384271 102 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 Y_RNA.557-201ENST00000384680 107 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 RPL23AP69-201ENST00000431134 458 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AC234775.1-201ENST00000454247 670 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AC087385.1-201ENST00000475062 312 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AC116337.1-201ENST00000509680 687 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AC022790.1-201ENST00000522872 204 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AC022882.1-201ENST00000532142 501 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 TUG1_2.1-201ENST00000614234 87 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AC007485.1-201ENST00000616755 206 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 AL162373.1-201ENST00000620433 407 ntBASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.73□□□□□ -1.65
USHBP1Q8N6Y0 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 DDX10P1-201ENST00000448545 1933 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 Y_RNA.176-201ENST00000363815 109 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 Y_RNA.364-201ENST00000365532 101 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 SMIM11P1-201ENST00000369586 178 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-128P-201ENST00000383976 107 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-890P-201ENST00000384121 107 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-393P-201ENST00000384475 107 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 HLFP1-201ENST00000402375 499 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AL583834.1-201ENST00000406943 343 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 CBX3P6-201ENST00000430257 527 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 RNU7-167P-201ENST00000459160 62 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 RPL37P6-202ENST00000464216 403 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 TBCAP3-201ENST00000512475 312 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 SNORA14.1-201ENST00000516113 141 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-1069P-201ENST00000516612 133 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 Y_RNA.708-201ENST00000516950 96 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AF186190.1-201ENST00000517470 480 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AP002404.1-201ENST00000532005 451 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AL161670.1-201ENST00000554348 137 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 MIR5692C1-201ENST00000585309 91 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AC011890.2-201ENST00000613393 294 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 MIR7112-201ENST00000616126 65 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AL589994.2-201ENST00000621124 579 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AC110801.1-201ENST00000623590 212 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AC092608.2-201ENST00000624427 218 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 PNPT1P2-201ENST00000456768 2050 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 AC007390.2-201ENST00000606229 3803 ntBASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
USHBP1Q8N6Y0 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
USHBP1Q8N6Y0 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
USHBP1Q8N6Y0 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-702P-201ENST00000364982 107 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AC019155.1-201ENST00000382242 574 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-434P-201ENST00000384376 107 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 HMGB3P2-201ENST00000411913 584 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AC096644.2-201ENST00000429278 159 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 FABP5P13-201ENST00000452144 328 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 RPL12P25-201ENST00000455592 494 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AC008481.1-201ENST00000463278 396 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 HMGB1P25-201ENST00000468402 607 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 MTND4LP22-201ENST00000508209 276 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.661-201ENST00000516003 99 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 RPL23AP84-201ENST00000571193 464 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 BNIP3P16-201ENST00000589779 534 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AC073539.2-201ENST00000597113 165 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms