Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC093536.2-201ENST00000565257 1406 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 RNU5E-1-201ENST00000362477 120 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RNU6-859P-201ENST00000362728 107 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RNU1-105P-201ENST00000363470 161 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RNU5E-6P-201ENST00000365574 115 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
SKA3Q8IX90 RNU6-14P-201ENST00000384630 106 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RNA5SP210-201ENST00000391034 120 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RNU6-817P-201ENST00000391083 104 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 MRPL42P2-201ENST00000403169 426 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL122016.1-201ENST00000403365 367 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RPS4XP7-201ENST00000406274 780 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RPLP0P7-201ENST00000416050 667 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 USP9YP20-201ENST00000419224 558 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL589872.1-201ENST00000426602 288 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL365496.1-201ENST00000426885 215 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 GPM6BP2-201ENST00000432046 144 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RPL36AP53-201ENST00000432891 316 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC011816.1-201ENST00000441346 546 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 GPM6BP1-201ENST00000446387 144 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 SNRPGP9-201ENST00000456025 225 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL049873.1-201ENST00000480540 376 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 RPL23AP70-201ENST00000483361 460 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 MTND1P3-201ENST00000484956 952 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC114786.4-201ENST00000508771 728 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC008716.1-201ENST00000511084 513 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 Y_RNA.672-201ENST00000516289 104 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AL359212.1-201ENST00000556608 614 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 MIR4319-201ENST00000577285 85 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 BNIP3P8-201ENST00000597863 560 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC121247.2-201ENST00000604776 136 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 OR2AS2P-201ENST00000606902 342 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 FRG1KP-201ENST00000623592 341 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC025048.6-202ENST00000627667 438 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
SKA3Q8IX90 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
SKA3Q8IX90 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SKA3Q8IX90 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
SKA3Q8IX90 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 HSPE1P11-201ENST00000339579 310 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC062016.1-201ENST00000355719 319 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 RNU6-288P-201ENST00000363690 104 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 RNU6-188P-201ENST00000364207 107 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 RNU6-190P-201ENST00000384154 102 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SKA3Q8IX90 RNU2-68P-201ENST00000410878 191 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 HMGN1P14-201ENST00000412459 517 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 ELOCP4-201ENST00000420090 333 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC063976.3-201ENST00000426849 329 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC009414.1-201ENST00000427200 443 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 ARL5AP4-201ENST00000430731 512 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC108938.1-201ENST00000451204 136 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 RPS27AP8-201ENST00000452665 445 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 FABP5P15-201ENST00000453566 214 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 RNU7-51P-201ENST00000516560 62 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 RNA5SP82-201ENST00000516707 92 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC022634.1-201ENST00000520765 532 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AL451064.1-201ENST00000607718 471 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC008498.1-201ENST00000613012 531 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC025594.3-201ENST00000613068 790 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 AP003399.1-201ENST00000637534 361 ntBASIC2.28□□□□□ -2.04
SKA3Q8IX90 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.28□□□□□ -2.04
SKA3Q8IX90 FGF7P2-201ENST00000332473 296 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 SNORD62.1-201ENST00000362541 86 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 SNORD116-8-201ENST00000384365 95 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 MIR34A-201ENST00000385130 110 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 RNA5SP354-201ENST00000391247 136 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 209.6 ms