Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.35□□□□□ -2.35
LINC00643Q86TS7 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC0.35□□□□□ -2.35
LINC00643Q86TS7 HSPA8P13-201ENST00000523715 472 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 OR5AK1P-201ENST00000524837 922 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 C1DP5-201ENST00000525775 383 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 CBX3P8-201ENST00000532412 525 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC034105.4-201ENST00000568304 277 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AL390838.2-201ENST00000602394 274 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 BX284668.6-201ENST00000606899 438 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC021851.1-201ENST00000608537 1082 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC135803.1-201ENST00000608748 565 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC073569.3-201ENST00000619055 682 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 MIR8065-201ENST00000620577 100 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.35□□□□□ -2.35
LINC00643Q86TS7 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
LINC00643Q86TS7 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.35
LINC00643Q86TS7 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
LINC00643Q86TS7 RNU5A-1-201ENST00000362698 116 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 MIR608-201ENST00000384820 100 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 MIR520E-201ENST00000384867 87 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 MIR128-1-201ENST00000384921 82 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 RNU11-5P-201ENST00000391216 129 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 AL139098.1-201ENST00000407291 389 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 SNORA3.2-201ENST00000408221 125 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.34□□□□□ -2.36
LINC00643Q86TS7 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
LINC00643Q86TS7 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.34□□□□□ -2.36
LINC00643Q86TS7 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.34□□□□□ -2.36
LINC00643Q86TS7 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.34□□□□□ -2.36
LINC00643Q86TS7 AC009268.1-201ENST00000561352 1203 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 MIR1254-2-201ENST00000579553 63 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 MIR4648-201ENST00000580107 72 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 MIR6748-201ENST00000610433 71 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 MIR6737-201ENST00000617385 70 ntBASIC0.34□□□□□ -2.36
LINC00643Q86TS7 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC0.34□□□□□ -2.36
LINC00643Q86TS7 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 DDX43P2-201ENST00000604753 1354 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC138393.1-203ENST00000327086 343 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 SNORA71.3-201ENST00000362582 128 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 SNORD82-201ENST00000365530 70 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 RNU6-444P-201ENST00000383988 108 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 SNORA25-201ENST00000384384 134 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AL591034.2-201ENST00000402839 359 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC078974.1-201ENST00000411597 223 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC097463.2-201ENST00000421074 142 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AL591043.1-201ENST00000432461 424 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 SNRPEP7-201ENST00000438350 220 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 SNRPFP4-201ENST00000456366 242 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 RPL31P50-201ENST00000471002 296 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC113420.1-201ENST00000507903 571 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 SCARNA15.2-201ENST00000516409 127 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 COPS8P3-201ENST00000526024 482 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC124293.1-201ENST00000530034 493 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AP003484.1-201ENST00000530974 250 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 LINC00557-201ENST00000563184 1279 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 MIR3937-201ENST00000580135 106 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC011494.1-201ENST00000596454 237 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 BNIP3P27-201ENST00000599991 412 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC009229.3-201ENST00000608056 282 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AL353770.2-201ENST00000620024 78 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 AC091965.5-201ENST00000624785 342 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 OR4G3P-201ENST00000633500 913 ntBASIC0.33□□□□□ -2.36
LINC00643Q86TS7 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
LINC00643Q86TS7 RNU5E-1-201ENST00000362477 120 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 SNORD33-201ENST00000362761 85 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AC083875.1-201ENST00000419509 405 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 RPL23AP16-201ENST00000441715 421 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 NDUFAF4P3-201ENST00000456468 525 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 SNORD13-201ENST00000459299 104 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 RPL22P13-201ENST00000493291 347 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 SNORA31.17-201ENST00000516953 127 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AC019176.1-201ENST00000518519 225 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 CYCSP27-201ENST00000527643 293 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AC006199.1-201ENST00000548728 219 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.32□□□□□ -2.36
LINC00643Q86TS7 MIR4698-201ENST00000577795 80 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 MIMT1-201ENST00000597105 1050 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 BBIP1P1-201ENST00000602999 279 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AL590095.2-201ENST00000604136 117 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AC069304.2-201ENST00000605154 435 ntBASIC0.32□□□□□ -2.36
LINC00643Q86TS7 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.31□□□□□ -2.36
LINC00643Q86TS7 PNRC2P1-201ENST00000423940 420 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms