Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 MIR6867-201ENST00000610636 67 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 Z69720.2-201ENST00000624755 279 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.15□□□□□ -1.75
USP53Q70EK8 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP53Q70EK8 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.15□□□□□ -1.75
USP53Q70EK8 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
USP53Q70EK8 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP53Q70EK8 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
USP53Q70EK8 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.14□□□□□ -1.75
USP53Q70EK8 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.14□□□□□ -1.75
USP53Q70EK8 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.14□□□□□ -1.75
USP53Q70EK8 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 SNORA70.4-201ENST00000365509 134 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 MRPL42P3-201ENST00000401492 326 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 RNA5SP44-201ENST00000410446 133 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 RNU4-6P-201ENST00000410804 122 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 CYCSP19-201ENST00000411715 316 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 AL627311.1-201ENST00000431514 115 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.14□□□□□ -1.75
USP53Q70EK8 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 AL583843.1-201ENST00000456070 346 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AL135752.1-201ENST00000479477 471 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC022493.2-201ENST00000506122 481 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 AC113155.1-201ENST00000511141 769 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 SNORA25.10-201ENST00000515926 124 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 RNU6-699P-201ENST00000517081 110 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 RNA5SP165-201ENST00000517142 115 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.14□□□□□ -1.75
USP53Q70EK8 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.14□□□□□ -1.75
USP53Q70EK8 BNIP3P16-201ENST00000589779 534 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC136601.2-201ENST00000604356 474 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.14□□□□□ -1.75
USP53Q70EK8 AC007485.1-201ENST00000616755 206 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 MIR6875-201ENST00000617506 72 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.14□□□□□ -1.75
USP53Q70EK8 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.14□□□□□ -1.75
USP53Q70EK8 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
USP53Q70EK8 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.14□□□□□ -1.75
USP53Q70EK8 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP53Q70EK8 NCAPGP1-201ENST00000505112 1814 ntBASIC4.14□□□□□ -1.75
USP53Q70EK8 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP53Q70EK8 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
USP53Q70EK8 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.13□□□□□ -1.75
USP53Q70EK8 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP53Q70EK8 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.13□□□□□ -1.75
USP53Q70EK8 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP53Q70EK8 Y_RNA.133-201ENST00000363428 110 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 Y_RNA.144-201ENST00000363521 113 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 RNY1P14-201ENST00000384426 108 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 Y_RNA.496-201ENST00000384444 101 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 SNORA40C-201ENST00000391285 128 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 RN7SKP177-201ENST00000410567 355 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 RNU6-55P-201ENST00000411092 107 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 AL358176.2-201ENST00000425769 204 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.13□□□□□ -1.75
USP53Q70EK8 AC021146.2-201ENST00000504736 556 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 Y_RNA.661-201ENST00000516003 99 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 AC023442.1-201ENST00000531247 422 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 TRAV32-201ENST00000553993 340 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 AC109446.1-201ENST00000566172 220 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.13□□□□□ -1.75
USP53Q70EK8 AL645944.1-201ENST00000603857 493 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 AL078596.1-201ENST00000624856 447 ntBASIC4.13□□□□□ -1.75
USP53Q70EK8 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP53Q70EK8 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.13□□□□□ -1.75
USP53Q70EK8 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.13□□□□□ -1.75
USP53Q70EK8 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP53Q70EK8 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.13□□□□□ -1.75
USP53Q70EK8 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.13□□□□□ -1.75
USP53Q70EK8 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP53Q70EK8 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.13□□□□□ -1.75
USP53Q70EK8 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP53Q70EK8 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP53Q70EK8 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
USP53Q70EK8 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP53Q70EK8 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP53Q70EK8 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP53Q70EK8 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.12□□□□□ -1.75
USP53Q70EK8 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP53Q70EK8 RNA5SP167-201ENST00000365461 116 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 Y_RNA.364-201ENST00000365532 101 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 RNU6-166P-201ENST00000384371 107 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 RNU6-1105P-201ENST00000384774 107 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 HDGFP1-201ENST00000405943 252 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 RNU6ATAC-201ENST00000408749 126 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 229.5 ms