Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 MTND5P16-201ENST00000460269 1703 ntBASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.55□□□□□ -1.68
RUFY4Q6ZNE9 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 Y_RNA.5-201ENST00000362334 102 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 Y_RNA.33-201ENST00000362591 102 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 RNU6-512P-201ENST00000364438 103 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 RNU6-1303P-201ENST00000364841 107 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 RNU2-3P-201ENST00000410144 191 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 RNA5SP44-201ENST00000410446 133 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 UBE2D3P2-201ENST00000424409 445 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AL590383.1-201ENST00000428602 75 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AL445584.1-201ENST00000431451 330 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 NOTCH2P1-201ENST00000443481 624 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 HMGB3P30-201ENST00000457863 606 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 MTND5P22-201ENST00000458380 195 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 Y_RNA.670-201ENST00000516255 105 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 RNA5SP143-201ENST00000516936 115 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 RNA5SP471-201ENST00000516971 106 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 RN7SKP295-201ENST00000517264 153 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 HSPE1P5-201ENST00000561489 272 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AC120057.2-201ENST00000571520 271 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AC083806.3-201ENST00000614016 455 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 AC018555.1-201ENST00000567548 1980 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 Z82217.1-201ENST00000625157 8149 ntBASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
RUFY4Q6ZNE9 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 RNA5SP502-201ENST00000362694 119 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 RNU6-1279P-201ENST00000383917 103 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 RNU6-890P-201ENST00000384121 107 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 SNORA11.1-201ENST00000408133 129 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 CYCSP33-201ENST00000414485 327 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 Z85995.1-201ENST00000415547 335 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 TOMM22P1-201ENST00000418578 312 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 RPS15AP6-201ENST00000420703 385 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 RBMY1KP-201ENST00000423480 476 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 USMG5P1-201ENST00000425964 177 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AL691449.1-201ENST00000426570 421 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC236972.1-201ENST00000433225 199 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 RNU6-1213P-201ENST00000517075 94 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AP003122.3-201ENST00000526316 255 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC084851.1-201ENST00000529105 249 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 MIR5684-201ENST00000585074 65 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC024220.1-201ENST00000603675 484 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 RNU6-85P-201ENST00000605989 107 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC012603.1-201ENST00000606424 528 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC011890.2-201ENST00000613393 294 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 AC039056.2-201ENST00000622261 511 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
RUFY4Q6ZNE9 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.53□□□□□ -1.69
RUFY4Q6ZNE9 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 RNU6-490P-201ENST00000362985 107 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 Y_RNA.324-201ENST00000365165 102 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 Y_RNA.459-201ENST00000384251 102 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 RNU6-1179P-201ENST00000384667 107 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 RPL23AP48-201ENST00000406913 488 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 RNA5SP306-201ENST00000411087 107 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 FABP5P15-201ENST00000453566 214 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 OR1M4P-201ENST00000589199 287 ntBASIC4.52□□□□□ -1.69
RUFY4Q6ZNE9 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 165.7 ms