Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC103851.1-201ENST00000506833 274 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 CYCSP27-201ENST00000527643 293 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 MIR1273C-201ENST00000578669 77 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 KLKP1-201ENST00000595979 403 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC243960.4-201ENST00000600532 288 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC012531.5-201ENST00000611375 151 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC005858.4-201ENST00000623191 700 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC244205.2-202ENST00000635781 342 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AC090740.1-201ENST00000623193 2262 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AL353746.1-201ENST00000566293 6881 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-694P-201ENST00000364071 147 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-512P-201ENST00000364438 103 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 RNU4-76P-201ENST00000364509 141 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-45P-201ENST00000384471 107 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 Y_RNA.509-201ENST00000384506 99 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AL391417.1-201ENST00000404100 426 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 NDUFB4P5-201ENST00000415445 361 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 RPLP0P7-201ENST00000416050 667 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 SYF2P2-201ENST00000417620 583 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AL592045.1-201ENST00000429867 352 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 HMGB1P18-201ENST00000438801 619 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 MRPL50P4-201ENST00000446432 475 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 FABP5P15-201ENST00000453566 214 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 PPP1R2P5-201ENST00000457256 603 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 MTCO1P29-201ENST00000496868 288 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 SNORA14.1-201ENST00000516113 141 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-1315P-201ENST00000517187 99 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AP001804.3-201ENST00000525146 880 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 TRAV28-201ENST00000557548 323 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 CTHRC1P1-201ENST00000605383 469 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AC103710.3-201ENST00000608157 948 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 U7.8-201ENST00000619968 63 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AC112487.2-201ENST00000637950 304 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AC119674.1-207ENST00000641355 633 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 AL359693.1-201ENST00000614959 2407 ntBASIC3.56□□□□□ -1.84
PTCHD3Q3KNS1 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC073073.2-201ENST00000609827 2578 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC007785.2-201ENST00000598627 1916 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-254P-201ENST00000363377 107 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 Y_RNA.245-201ENST00000364493 95 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP51-201ENST00000364750 119 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 DEFB109C-201ENST00000382575 264 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 DEFB109B-201ENST00000382656 264 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 Y_RNA.480-201ENST00000384364 102 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP219-201ENST00000390940 113 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 HSPE1P26-201ENST00000405341 275 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 RPS29P4-201ENST00000414733 161 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC063979.1-201ENST00000415539 377 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 BTF3L4P3-201ENST00000418879 476 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC006946.1-201ENST00000429106 328 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 HMGN2P31-201ENST00000432430 273 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC073063.1-201ENST00000434352 607 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 HMGB1P12-201ENST00000438594 598 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 RPL7P5-201ENST00000471472 736 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 SUMO2P6-201ENST00000505273 288 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 SCOCP1-201ENST00000554676 349 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC026464.5-201ENST00000562497 722 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 MIR548AC-201ENST00000585049 88 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC069200.1-201ENST00000609511 323 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AL391261.4-201ENST00000616012 481 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AL512643.1-201ENST00000635735 524 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 Z99571.1-201ENST00000636677 394 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 AL672296.1-201ENST00000427780 2158 ntBASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PTCHD3Q3KNS1 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 MIR208A-201ENST00000362287 71 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-283P-201ENST00000364788 107 ntBASIC3.54□□□□□ -1.84
PTCHD3Q3KNS1 RNU6-1197P-201ENST00000391183 107 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms