Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MTCO3P1-205ENST00000422088 832 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 UBE2V1P4-201ENST00000425374 344 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 PTGES3P4-201ENST00000426243 356 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 MTND4LP14-201ENST00000429447 288 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 NANOGP2-201ENST00000435391 727 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AL691517.1-201ENST00000440833 1235 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 SNRPGP13-201ENST00000442212 177 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA3P55318 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.03□□□□□ -2.24
FOXA3P55318 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.03□□□□□ -2.24
FOXA3P55318 MTND3P4-201ENST00000453537 303 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 TRBV12-1-201ENST00000479785 344 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.03□□□□□ -2.24
FOXA3P55318 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA3P55318 SUB1P3-201ENST00000564581 315 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA3P55318 BNIP3P19-201ENST00000605397 577 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AC091946.2-201ENST00000606105 291 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AL158211.4-201ENST00000606988 584 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AC092953.2-201ENST00000608000 699 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AP005229.2-201ENST00000609980 697 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AC006338.1-201ENST00000618453 749 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 AL118508.4-201ENST00000624142 1176 ntBASIC1.03□□□□□ -2.24
FOXA3P55318 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
FOXA3P55318 AC091812.1-201ENST00000432235 1948 ntBASIC1.03□□□□□ -2.25
FOXA3P55318 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.02□□□□□ -2.25
FOXA3P55318 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
FOXA3P55318 SNORD26-201ENST00000384147 75 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 MIR29C-201ENST00000385231 88 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 MIR1302-8-201ENST00000408342 128 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 MTATP6P27-201ENST00000416987 621 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 BOLA3P4-201ENST00000418151 400 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA3P55318 USP9YP24-201ENST00000434374 697 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA3P55318 AC005539.1-201ENST00000443768 1479 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 KATNBL1P6-201ENST00000453433 915 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 RNA5SP57-201ENST00000459463 123 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 BOLA3P3-201ENST00000505182 232 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 MTND4P2-201ENST00000507767 1203 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 SNORA25.15-201ENST00000516487 89 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 RNA5SP290-201ENST00000517133 127 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 SNORA31.24-201ENST00000517232 57 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA3P55318 AP003497.1-201ENST00000528472 562 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 AP000776.1-201ENST00000530032 1663 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA3P55318 AC068338.1-201ENST00000565567 176 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 AC090079.2-201ENST00000575289 768 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 AC004805.2-201ENST00000605382 482 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA3P55318 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.02□□□□□ -2.25
FOXA3P55318 AP003476.1-201ENST00000623984 516 ntBASIC1.02□□□□□ -2.25
FOXA3P55318 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.01□□□□□ -2.25
FOXA3P55318 U8.13-201ENST00000390842 128 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 RNU2-41P-201ENST00000410991 178 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AC078974.1-201ENST00000411597 223 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 TPMTP3-201ENST00000411928 735 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC1.01□□□□□ -2.25
FOXA3P55318 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.01□□□□□ -2.25
FOXA3P55318 MTCYBP32-201ENST00000427945 1084 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 HMGN2P3-201ENST00000433603 273 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 HMGN2P5-201ENST00000436882 273 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.01□□□□□ -2.25
FOXA3P55318 AC007000.2-201ENST00000442564 487 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AC007677.1-201ENST00000445757 515 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 UBL5P3-201ENST00000475112 231 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AC008837.1-201ENST00000511513 412 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.01□□□□□ -2.25
FOXA3P55318 AC015720.1-201ENST00000565251 277 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AL356432.3-201ENST00000568952 465 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 MIR3683-201ENST00000580847 82 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.01□□□□□ -2.25
FOXA3P55318 AL355598.1-201ENST00000604169 202 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 MIR6845-201ENST00000613182 61 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AC107075.1-201ENST00000613695 314 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 AC008121.3-201ENST00000618726 433 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 U1.36-201ENST00000620684 176 ntBASIC1.01□□□□□ -2.25
FOXA3P55318 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.01□□□□□ -2.25
FOXA3P55318 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
FOXA3P55318 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
FOXA3P55318 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1□□□□□ -2.25
FOXA3P55318 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1□□□□□ -2.25
FOXA3P55318 RNU4-13P-201ENST00000364019 141 ntBASIC1□□□□□ -2.25
FOXA3P55318 SNORA70B-201ENST00000384210 135 ntBASIC1□□□□□ -2.25
FOXA3P55318 RPL22P22-201ENST00000395439 379 ntBASIC1□□□□□ -2.25
FOXA3P55318 AL353621.1-201ENST00000418219 243 ntBASIC1□□□□□ -2.25
FOXA3P55318 AC007435.1-201ENST00000421086 415 ntBASIC1□□□□□ -2.25
FOXA3P55318 AL513185.2-201ENST00000425543 193 ntBASIC1□□□□□ -2.25
FOXA3P55318 C1DP1-201ENST00000426049 402 ntBASIC1□□□□□ -2.25
FOXA3P55318 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1□□□□□ -2.25
FOXA3P55318 AC112492.4-201ENST00000456549 352 ntBASIC1□□□□□ -2.25
FOXA3P55318 AL441985.1-201ENST00000457727 251 ntBASIC1□□□□□ -2.25
FOXA3P55318 AC026410.2-201ENST00000460281 156 ntBASIC1□□□□□ -2.25
FOXA3P55318 AC008379.1-201ENST00000463655 464 ntBASIC1□□□□□ -2.25
FOXA3P55318 RPL36AP48-201ENST00000485521 314 ntBASIC1□□□□□ -2.25
FOXA3P55318 RN7SKP179-201ENST00000516126 217 ntBASIC1□□□□□ -2.25
FOXA3P55318 snoZ278.1-201ENST00000517059 112 ntBASIC1□□□□□ -2.25
FOXA3P55318 AP000916.1-201ENST00000533869 835 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms