Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-483P-201ENST00000384088 108 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RNU6-297P-201ENST00000384636 107 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AL590004.1-201ENST00000405321 300 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RNU2-2P-201ENST00000410396 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RPL17P12-201ENST00000413391 526 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AC009302.1-201ENST00000417147 390 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 USP9YP27-201ENST00000418455 438 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AC093084.1-201ENST00000424233 687 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AC005534.2-201ENST00000431047 433 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.34□□□□□ -2.03
COL4A4P53420 HMGB3P10-201ENST00000434734 572 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 MTND4LP10-201ENST00000435146 291 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RPL37P21-201ENST00000435890 276 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AL353093.1-201ENST00000441292 436 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RPL39P6-201ENST00000448289 150 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RPL23AP35-201ENST00000451906 501 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC2.34□□□□□ -2.03
COL4A4P53420 RNU6-1225P-201ENST00000516336 65 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RNA5SP402-201ENST00000517148 110 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AP001893.2-201ENST00000526949 202 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AL157687.1-201ENST00000554853 619 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 HMGB1P33-201ENST00000563485 527 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.34□□□□□ -2.03
COL4A4P53420 U2.15-201ENST00000611544 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.16-201ENST00000613119 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.12-201ENST00000613778 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.20-201ENST00000613956 192 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.9-201ENST00000615427 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.11-201ENST00000616345 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.2-201ENST00000616535 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.3-201ENST00000617785 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.19-201ENST00000618602 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RNU2-1-201ENST00000618664 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.6-201ENST00000619225 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.5-201ENST00000619465 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AC136475.10-201ENST00000620253 385 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 U2.10-201ENST00000620268 191 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 AC112487.2-201ENST00000637950 304 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL4A4P53420 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL4A4P53420 MTND5P7-201ENST00000413558 1798 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.34□□□□□ -2.04
COL4A4P53420 HMGB1P5-201ENST00000255320 642 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 RNU6-845P-201ENST00000362578 103 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 Y_RNA.89-201ENST00000363031 102 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 RNY1P10-201ENST00000363268 113 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 RNU5F-7P-201ENST00000363696 115 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 RNU6-534P-201ENST00000364877 106 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.34□□□□□ -2.04
COL4A4P53420 Y_RNA.509-201ENST00000384506 99 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 RNA5SP105-201ENST00000391123 113 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MTCO3P40-201ENST00000392516 676 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MIR1302-11-201ENST00000408051 138 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MIR1302-9-201ENST00000408365 138 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MIR1302-10-201ENST00000408734 138 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 SNORA11.4-201ENST00000408823 129 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 RPS20P15-201ENST00000412792 311 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.34□□□□□ -2.04
COL4A4P53420 UBE2FP3-201ENST00000436366 524 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 SDCBPP1-201ENST00000440192 890 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 ARL5AP2-201ENST00000444698 533 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.34□□□□□ -2.04
COL4A4P53420 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.34□□□□□ -2.04
COL4A4P53420 NF1P3-201ENST00000457709 450 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 ARPC3P2-201ENST00000457786 533 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AC022364.2-201ENST00000457963 554 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.34□□□□□ -2.04
COL4A4P53420 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
COL4A4P53420 RPL39P36-201ENST00000490784 156 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.34□□□□□ -2.04
COL4A4P53420 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.34□□□□□ -2.04
COL4A4P53420 NDUFB4P9-201ENST00000511646 388 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 RN7SKP96-201ENST00000516948 297 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.34□□□□□ -2.04
COL4A4P53420 AP002748.2-201ENST00000528671 348 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.34□□□□□ -2.04
COL4A4P53420 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC2.34□□□□□ -2.04
COL4A4P53420 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.34□□□□□ -2.04
COL4A4P53420 AC022432.1-201ENST00000595739 310 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.34□□□□□ -2.04
COL4A4P53420 AL356575.1-201ENST00000603008 283 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AC010200.2-201ENST00000605098 235 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AC055876.5-201ENST00000605667 259 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MIR1302-2-201ENST00000607096 138 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 Y_RNA.812-201ENST00000610788 101 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AC245517.5-201ENST00000611529 162 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 Y_RNA.784-201ENST00000613803 101 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 Y_RNA.787-201ENST00000616522 101 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 Y_RNA.780-201ENST00000617336 101 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 Y_RNA.801-201ENST00000619005 101 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 AC092650.2-201ENST00000619984 902 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 YWHAEP7-203ENST00000622054 312 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MIR219B-201ENST00000637023 88 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 MIR3662-201ENST00000637030 95 ntBASIC2.34□□□□□ -2.04
COL4A4P53420 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
COL4A4P53420 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
COL4A4P53420 AL450326.2-201ENST00000421913 1962 ntBASIC2.33□□□□□ -2.04
COL4A4P53420 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms