Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 RNU6-512P-201ENST00000364438 103 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AL139095.1-201ENST00000404326 391 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 Y_RNA.598-201ENST00000410480 95 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 NDUFS5P4-201ENST00000412983 318 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 RPS15AP12-201ENST00000419498 388 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC098614.2-201ENST00000426040 255 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
TNFRSF4P43489 RPL36AP53-201ENST00000432891 316 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 RPS15AP5-201ENST00000436276 388 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 Z96811.1-201ENST00000445880 108 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
TNFRSF4P43489 MTND1P12-201ENST00000455231 147 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 SNRPFP4-201ENST00000456366 242 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 RNA5SP269-201ENST00000459032 137 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 RPS29P20-201ENST00000489592 171 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC008413.1-201ENST00000511864 177 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 SNORA31.26-201ENST00000517250 137 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 AP003122.3-201ENST00000526316 255 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC011979.2-201ENST00000527568 352 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC243972.3-201ENST00000539655 198 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC010546.1-201ENST00000569391 485 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 MIR4635-201ENST00000583759 79 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC119751.7-201ENST00000600494 245 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC245008.1-201ENST00000608123 476 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC008250.2-201ENST00000615261 205 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC091953.2-201ENST00000623979 160 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 AC090582.1-201ENST00000636321 199 ntBASIC2.64□□□□□ -1.99
TNFRSF4P43489 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
TNFRSF4P43489 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
TNFRSF4P43489 Y_RNA.51-201ENST00000362725 102 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 SNORA40.3-201ENST00000390964 122 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AL139397.2-201ENST00000404529 772 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 Y_RNA.608-201ENST00000410647 95 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 HMGN1P14-201ENST00000412459 517 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 BTF3L4P1-201ENST00000413813 468 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AL513477.1-202ENST00000417061 214 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC009963.1-201ENST00000417265 157 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC016907.1-201ENST00000419483 435 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 ISCA1P1-201ENST00000426679 387 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.63□□□□□ -1.99
TNFRSF4P43489 HMGB1P9-201ENST00000429856 646 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC104332.2-201ENST00000429959 156 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC009296.1-201ENST00000443146 155 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 RPL31P41-201ENST00000477967 372 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC105252.1-201ENST00000503089 286 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 SEM1P1-201ENST00000506694 209 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 RNU2-10P-201ENST00000516375 211 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 RNU6-56P-201ENST00000516986 93 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC022878.1-201ENST00000530684 149 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AP000873.5-201ENST00000533906 236 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC027176.1-201ENST00000560204 514 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 SNORD53-201ENST00000579969 78 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 MIR3118-1-201ENST00000581787 76 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.63□□□□□ -1.99
TNFRSF4P43489 AL589994.2-201ENST00000621124 579 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC009878.1-201ENST00000621819 340 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.63□□□□□ -1.99
TNFRSF4P43489 AC064859.1-201ENST00000624741 174 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
TNFRSF4P43489 CR848007.1-201ENST00000442354 1699 ntBASIC2.63□□□□□ -1.99
TNFRSF4P43489 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
TNFRSF4P43489 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
TNFRSF4P43489 AL390237.1-201ENST00000404226 1415 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 RNU6-511P-201ENST00000363496 107 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 RNU4-91P-201ENST00000364778 135 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 SNORA70B-201ENST00000384210 135 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 RNU6-817P-201ENST00000391083 104 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 MRPL42P2-201ENST00000403169 426 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 RNU2-36P-201ENST00000410361 191 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 USP9YP20-201ENST00000419224 558 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 MTCO2P34-201ENST00000421994 607 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 MTND4P25-201ENST00000441039 533 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC011816.1-201ENST00000441346 546 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 ST13P20-201ENST00000447996 1065 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 MTND1P27-201ENST00000451117 902 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 FABP5P15-201ENST00000453566 214 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 RNU6-953P-201ENST00000459154 107 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC092185.1-201ENST00000491371 97 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 177.8 ms