Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RFX1P22670 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
RFX1P22670 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.16□□□□□ -1.58
RFX1P22670 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
RFX1P22670 RNU6-78P-201ENST00000362897 107 ntBASIC5.16□□□□□ -1.58
RFX1P22670 RNU1-83P-201ENST00000363426 164 ntBASIC5.16□□□□□ -1.58
RFX1P22670 U3.6-201ENST00000363622 211 ntBASIC5.16□□□□□ -1.58
RFX1P22670 RNU6-713P-201ENST00000384761 107 ntBASIC5.16□□□□□ -1.58
RFX1P22670 MIR325-201ENST00000385260 98 ntBASIC5.16□□□□□ -1.58
RFX1P22670 MT-TR-201ENST00000387439 65 ntBASIC5.16□□□□□ -1.58
RFX1P22670 RN7SKP106-201ENST00000410832 272 ntBASIC5.16□□□□□ -1.58
RFX1P22670 RPL26P27-201ENST00000414397 437 ntBASIC5.16□□□□□ -1.58
RFX1P22670 ELOCP20-201ENST00000422460 345 ntBASIC5.16□□□□□ -1.58
RFX1P22670 RBMY1KP-201ENST00000423480 476 ntBASIC5.16□□□□□ -1.58
RFX1P22670 FCF1P4-201ENST00000448326 183 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AC010326.1-201ENST00000462726 602 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AC104564.1-201ENST00000493028 407 ntBASIC5.16□□□□□ -1.58
RFX1P22670 IGKV2D-19-201ENST00000523346 262 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AP000827.1-201ENST00000527814 258 ntBASIC5.16□□□□□ -1.58
RFX1P22670 OR5D17P-201ENST00000531492 978 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AC010186.2-204ENST00000537668 439 ntBASIC5.16□□□□□ -1.58
RFX1P22670 UBE2Q2P8-201ENST00000560644 102 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC5.16□□□□□ -1.58
RFX1P22670 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.16□□□□□ -1.58
RFX1P22670 AC024153.1-201ENST00000603103 365 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AC006077.1-201ENST00000604746 343 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AL442067.1-201ENST00000613261 223 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AC090617.7-201ENST00000623952 126 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AC243829.7-201ENST00000633081 225 ntBASIC5.16□□□□□ -1.58
RFX1P22670 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.16□□□□□ -1.58
RFX1P22670 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
RFX1P22670 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
RFX1P22670 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
RFX1P22670 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
RFX1P22670 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
RFX1P22670 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
RFX1P22670 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
RFX1P22670 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
RFX1P22670 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
RFX1P22670 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
RFX1P22670 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
RFX1P22670 RNU1-108P-201ENST00000362556 161 ntBASIC5.15□□□□□ -1.59
RFX1P22670 RNU6-778P-201ENST00000363269 103 ntBASIC5.15□□□□□ -1.59
RFX1P22670 RNU4-50P-201ENST00000364361 141 ntBASIC5.15□□□□□ -1.59
RFX1P22670 RNU6-336P-201ENST00000364891 107 ntBASIC5.15□□□□□ -1.59
RFX1P22670 SNORA69.1-201ENST00000390904 137 ntBASIC5.15□□□□□ -1.59
RFX1P22670 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
RFX1P22670 RPS20P14-201ENST00000412545 360 ntBASIC5.15□□□□□ -1.59
RFX1P22670 MTND3P9-201ENST00000429526 346 ntBASIC5.15□□□□□ -1.59
RFX1P22670 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC5.15□□□□□ -1.59
RFX1P22670 snoU109.2-201ENST00000459316 135 ntBASIC5.15□□□□□ -1.59
RFX1P22670 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
RFX1P22670 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC5.15□□□□□ -1.59
RFX1P22670 AL590705.4-201ENST00000532209 134 ntBASIC5.15□□□□□ -1.59
RFX1P22670 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC5.15□□□□□ -1.59
RFX1P22670 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC5.15□□□□□ -1.59
RFX1P22670 MIR5699-201ENST00000578903 90 ntBASIC5.15□□□□□ -1.59
RFX1P22670 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
RFX1P22670 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
RFX1P22670 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
RFX1P22670 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
RFX1P22670 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
RFX1P22670 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC5.15□□□□□ -1.59
RFX1P22670 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.15□□□□□ -1.59
RFX1P22670 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
RFX1P22670 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
RFX1P22670 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
RFX1P22670 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
RFX1P22670 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
RFX1P22670 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
RFX1P22670 AC007656.2-201ENST00000624902 4547 ntBASIC5.14□□□□□ -1.59
RFX1P22670 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.14□□□□□ -1.59
RFX1P22670 Y_RNA.222-201ENST00000364264 102 ntBASIC5.14□□□□□ -1.59
RFX1P22670 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
RFX1P22670 RNU6-472P-201ENST00000384299 107 ntBASIC5.14□□□□□ -1.59
RFX1P22670 SNORA51.11-201ENST00000384442 131 ntBASIC5.14□□□□□ -1.59
RFX1P22670 U3.30-201ENST00000391308 210 ntBASIC5.14□□□□□ -1.59
RFX1P22670 MIR921-201ENST00000401133 56 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RNA5SP129-201ENST00000410276 118 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RN7SKP177-201ENST00000410567 355 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RNA5SP494-201ENST00000410653 129 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RN7SKP100-201ENST00000411258 284 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AC124916.1-201ENST00000444020 547 ntBASIC5.14□□□□□ -1.59
RFX1P22670 DCLRE1CP1-201ENST00000454630 470 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AURKAPS2-201ENST00000454983 333 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RPS5P7-201ENST00000456664 608 ntBASIC5.14□□□□□ -1.59
RFX1P22670 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5.14□□□□□ -1.59
RFX1P22670 AC026402.1-201ENST00000513642 170 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RN7SKP122-201ENST00000515923 296 ntBASIC5.14□□□□□ -1.59
RFX1P22670 SNORA25.11-201ENST00000515935 105 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RNU6-1143P-201ENST00000516125 104 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RNU6-1183P-201ENST00000517054 60 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AC090281.1-201ENST00000523019 276 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.14□□□□□ -1.59
RFX1P22670 CASP1P1-201ENST00000526345 212 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AC022726.1-201ENST00000587475 207 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AL590392.1-201ENST00000604960 446 ntBASIC5.14□□□□□ -1.59
RFX1P22670 RAC1P9-201ENST00000604990 392 ntBASIC5.14□□□□□ -1.59
RFX1P22670 AL159153.1-201ENST00000619688 317 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms