Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.87□□□□□ -1.63
LIG1P18858 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG1P18858 ANP32BP2-201ENST00000454525 545 ntBASIC4.87□□□□□ -1.63
LIG1P18858 HMGN2P7-201ENST00000456186 273 ntBASIC4.87□□□□□ -1.63
LIG1P18858 AC006517.1-201ENST00000480485 328 ntBASIC4.87□□□□□ -1.63
LIG1P18858 RPS27AP13-201ENST00000498403 237 ntBASIC4.87□□□□□ -1.63
LIG1P18858 AC093852.1-201ENST00000503587 266 ntBASIC4.87□□□□□ -1.63
LIG1P18858 NDUFB4P9-201ENST00000511646 388 ntBASIC4.87□□□□□ -1.63
LIG1P18858 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG1P18858 Y_RNA.715-201ENST00000517082 110 ntBASIC4.87□□□□□ -1.63
LIG1P18858 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.87□□□□□ -1.63
LIG1P18858 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.87□□□□□ -1.63
LIG1P18858 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.87□□□□□ -1.63
LIG1P18858 AC023575.1-201ENST00000580510 358 ntBASIC4.87□□□□□ -1.63
LIG1P18858 MIR5692A1-201ENST00000580523 69 ntBASIC4.87□□□□□ -1.63
LIG1P18858 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG1P18858 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.87□□□□□ -1.63
LIG1P18858 AC093227.2-201ENST00000589357 285 ntBASIC4.87□□□□□ -1.63
LIG1P18858 AC012669.1-201ENST00000603209 283 ntBASIC4.87□□□□□ -1.63
LIG1P18858 AC110741.2-201ENST00000605278 268 ntBASIC4.87□□□□□ -1.63
LIG1P18858 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIG1P18858 MIR4727-201ENST00000622232 55 ntBASIC4.87□□□□□ -1.63
LIG1P18858 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.87□□□□□ -1.63
LIG1P18858 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.87□□□□□ -1.63
LIG1P18858 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
LIG1P18858 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIG1P18858 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.87□□□□□ -1.63
LIG1P18858 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
LIG1P18858 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
LIG1P18858 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 MTND5P27-201ENST00000428871 1720 ntBASIC4.86□□□□□ -1.63
LIG1P18858 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 RNU6-1303P-201ENST00000364841 107 ntBASIC4.86□□□□□ -1.63
LIG1P18858 Y_RNA.314-201ENST00000365114 102 ntBASIC4.86□□□□□ -1.63
LIG1P18858 SNORA62-201ENST00000365493 153 ntBASIC4.86□□□□□ -1.63
LIG1P18858 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 RNU6-713P-201ENST00000384761 107 ntBASIC4.86□□□□□ -1.63
LIG1P18858 MIR1183-201ENST00000408856 89 ntBASIC4.86□□□□□ -1.63
LIG1P18858 AC108032.1-201ENST00000416706 207 ntBASIC4.86□□□□□ -1.63
LIG1P18858 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 PCMTD1P1-201ENST00000455560 355 ntBASIC4.86□□□□□ -1.63
LIG1P18858 FTH1P2-201ENST00000466086 412 ntBASIC4.86□□□□□ -1.63
LIG1P18858 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 RN7SL860P-201ENST00000473738 223 ntBASIC4.86□□□□□ -1.63
LIG1P18858 VN1R104P-201ENST00000505115 1009 ntBASIC4.86□□□□□ -1.63
LIG1P18858 AC087369.1-201ENST00000520775 996 ntBASIC4.86□□□□□ -1.63
LIG1P18858 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.86□□□□□ -1.63
LIG1P18858 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC4.86□□□□□ -1.63
LIG1P18858 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.86□□□□□ -1.63
LIG1P18858 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.86□□□□□ -1.63
LIG1P18858 AC004805.2-201ENST00000605382 482 ntBASIC4.86□□□□□ -1.63
LIG1P18858 SDR42E1P2-201ENST00000614861 481 ntBASIC4.86□□□□□ -1.63
LIG1P18858 AC048347.1-201ENST00000624621 427 ntBASIC4.86□□□□□ -1.63
LIG1P18858 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIG1P18858 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG1P18858 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIG1P18858 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LIG1P18858 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
LIG1P18858 RNU6-288P-201ENST00000363690 104 ntBASIC4.85□□□□□ -1.63
LIG1P18858 Y_RNA.350-201ENST00000365409 98 ntBASIC4.85□□□□□ -1.63
LIG1P18858 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LIG1P18858 AL138885.1-201ENST00000405921 675 ntBASIC4.85□□□□□ -1.63
LIG1P18858 RPL21P90-201ENST00000415692 466 ntBASIC4.85□□□□□ -1.63
LIG1P18858 EI24P1-201ENST00000416584 867 ntBASIC4.85□□□□□ -1.63
LIG1P18858 RBMY1KP-201ENST00000423480 476 ntBASIC4.85□□□□□ -1.63
LIG1P18858 RPS29P17-201ENST00000430795 166 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AL133396.1-201ENST00000432048 687 ntBASIC4.85□□□□□ -1.63
LIG1P18858 TPT1P12-201ENST00000448968 492 ntBASIC4.85□□□□□ -1.63
LIG1P18858 CHEK2P4-201ENST00000450340 246 ntBASIC4.85□□□□□ -1.63
LIG1P18858 RPL23AP31-201ENST00000456160 467 ntBASIC4.85□□□□□ -1.63
LIG1P18858 RNU6-1132P-201ENST00000459214 107 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC109327.1-201ENST00000471666 403 ntBASIC4.85□□□□□ -1.63
LIG1P18858 RN7SL812P-201ENST00000493791 279 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC022447.4-201ENST00000504053 364 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC105758.1-201ENST00000506038 399 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIG1P18858 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.85□□□□□ -1.63
LIG1P18858 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.85□□□□□ -1.63
LIG1P18858 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG1P18858 MIR4644-201ENST00000579929 84 ntBASIC4.85□□□□□ -1.63
LIG1P18858 MIR5188-201ENST00000583467 113 ntBASIC4.85□□□□□ -1.63
LIG1P18858 MIR15A-201ENST00000607334 83 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC012531.5-201ENST00000611375 151 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC141273.2-201ENST00000618989 130 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC015967.1-201ENST00000619893 476 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC233263.6-201ENST00000631132 1963 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC008669.1-201ENST00000565823 2178 ntBASIC4.85□□□□□ -1.63
LIG1P18858 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIG1P18858 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIG1P18858 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIG1P18858 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIG1P18858 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
LIG1P18858 USP8P1-201ENST00000494673 3183 ntBASIC4.84□□□□□ -1.63
LIG1P18858 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
LIG1P18858 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
LIG1P18858 RNU6-263P-201ENST00000363811 107 ntBASIC4.84□□□□□ -1.63
LIG1P18858 RNU2-43P-201ENST00000410306 190 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms