Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC109329.2-201ENST00000519658 482 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.97□□□□□ -1.77
HMGB1P09429 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.97□□□□□ -1.77
HMGB1P09429 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.97□□□□□ -1.77
HMGB1P09429 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.97□□□□□ -1.77
HMGB1P09429 AC034105.4-201ENST00000568304 277 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 MIR3913-1-201ENST00000577744 102 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AC015917.1-201ENST00000579654 510 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AC105245.1-201ENST00000581934 244 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 U3.45-201ENST00000607547 219 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.97□□□□□ -1.77
HMGB1P09429 AC008147.4-201ENST00000617570 1204 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HMGB1P09429 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.97□□□□□ -1.77
HMGB1P09429 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
HMGB1P09429 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.97□□□□□ -1.77
HMGB1P09429 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HMGB1P09429 MIR200C-201ENST00000384980 68 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 MIR34A-201ENST00000385130 110 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 RPL21P90-201ENST00000415692 466 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 AC098826.1-201ENST00000433943 471 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 AC122718.1-201ENST00000439448 744 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.96□□□□□ -1.78
HMGB1P09429 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.96□□□□□ -1.78
HMGB1P09429 AC009961.3-201ENST00000449832 765 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.96□□□□□ -1.78
HMGB1P09429 RPS4XP22-201ENST00000480755 780 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.96□□□□□ -1.78
HMGB1P09429 AC135279.1-201ENST00000543493 504 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 MIR5571-201ENST00000577998 113 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.96□□□□□ -1.78
HMGB1P09429 AC073476.4-201ENST00000628409 72 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
HMGB1P09429 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
HMGB1P09429 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.96□□□□□ -1.78
HMGB1P09429 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HMGB1P09429 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HMGB1P09429 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.95□□□□□ -1.78
HMGB1P09429 RNA5SP197-201ENST00000363357 119 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 SNORA62.3-201ENST00000365110 153 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 SNORD115-7-201ENST00000365306 82 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 RNU6-456P-201ENST00000384493 107 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 MIR1-2-201ENST00000384961 85 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 U3.37-201ENST00000408528 213 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 AC097463.2-201ENST00000421074 142 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 RPL23AP20-201ENST00000447965 421 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 FAM133DP-201ENST00000464802 691 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.95□□□□□ -1.78
HMGB1P09429 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.95□□□□□ -1.78
HMGB1P09429 MIR3922-201ENST00000585192 84 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.95□□□□□ -1.78
HMGB1P09429 AL449363.1-201ENST00000617815 186 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 Z69908.1-201ENST00000622603 247 ntBASIC3.95□□□□□ -1.78
HMGB1P09429 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HMGB1P09429 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HMGB1P09429 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HMGB1P09429 AC138393.1-203ENST00000327086 343 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 RNU6-1287P-201ENST00000362914 107 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 RNU6-1060P-201ENST00000384664 107 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
HMGB1P09429 CIR1P3-201ENST00000405137 479 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 AL031779.1-201ENST00000415663 330 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 CALM2P2-201ENST00000428512 440 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 ATP5C1P1-201ENST00000441945 895 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 MTND2P4-201ENST00000445034 1004 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 RPL7P12-201ENST00000446719 750 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC104058.1-201ENST00000448028 297 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 EEF1B2P7-201ENST00000451177 676 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 HMGN1P18-201ENST00000457642 277 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.94□□□□□ -1.78
HMGB1P09429 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 MTCO3P28-201ENST00000513351 515 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC005476.1-201ENST00000554427 397 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 MIR5692A1-201ENST00000580523 69 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 MIR5194-201ENST00000582634 120 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 AC098614.4-201ENST00000607601 462 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 uc_338.1-201ENST00000612113 180 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AL355365.1-201ENST00000616480 294 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 AC010378.1-201ENST00000619270 362 ntBASIC3.94□□□□□ -1.78
HMGB1P09429 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
HMGB1P09429 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.94□□□□□ -1.78
HMGB1P09429 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HMGB1P09429 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.94□□□□□ -1.78
HMGB1P09429 HSPA8P4-201ENST00000511877 1920 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 MTND5P17-201ENST00000418405 1603 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HMGB1P09429 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HMGB1P09429 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HMGB1P09429 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HMGB1P09429 RNA5SP50-201ENST00000363731 107 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HMGB1P09429 AL592148.1-201ENST00000413568 445 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms