Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DOAP06340 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DOAP06340 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DOAP06340 SNORA4.3-201ENST00000365564 137 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 RNU6-550P-201ENST00000391057 101 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 RNY4P36-201ENST00000391116 96 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL357075.1-201ENST00000404107 726 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL137014.1-201ENST00000420490 1226 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 Z75741.1-201ENST00000446793 314 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 Y_RNA.639-201ENST00000458981 102 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 RN7SL504P-201ENST00000494496 287 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 HMGB3P15-201ENST00000507326 574 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 TBCAP3-201ENST00000512475 312 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 RNU6-1170P-201ENST00000515974 106 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC090136.1-201ENST00000520009 240 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 HMGN1P28-201ENST00000521340 364 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL137161.1-201ENST00000532231 390 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC005476.1-201ENST00000554427 397 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC008521.1-201ENST00000587471 187 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 AC092747.3-201ENST00000603769 301 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 IGHV3-29-201ENST00000604817 344 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AL080274.1-201ENST00000605565 220 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 AP001486.3-201ENST00000615334 372 ntBASIC3.95□□□□□ -1.78
HLA-DOAP06340 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HLA-DOAP06340 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.95□□□□□ -1.78
HLA-DOAP06340 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 Y_RNA.128-201ENST00000363391 112 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 RN7SKP44-201ENST00000363602 316 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 RNU6-701P-201ENST00000384059 107 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 RNU4-65P-201ENST00000410473 140 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 RNU6-370P-201ENST00000411008 104 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC126124.2-201ENST00000413542 321 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 MTCO2P27-201ENST00000420740 428 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 RAC1P6-201ENST00000423911 575 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC079780.1-201ENST00000428259 207 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC004866.2-201ENST00000438285 481 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 Y_RNA.635-201ENST00000459041 101 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC008481.1-201ENST00000463278 396 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 RPS29P2-201ENST00000479278 136 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 Y_RNA.654-201ENST00000497848 106 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC098591.2-201ENST00000510152 315 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC026801.2-201ENST00000515352 425 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC107934.2-201ENST00000518653 310 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AP000889.2-201ENST00000532684 490 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AL163153.1-201ENST00000554223 283 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 DNAJC8P1-201ENST00000554535 372 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AL121576.1-201ENST00000556055 276 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 MIR5004-201ENST00000579078 107 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AF038458.1-201ENST00000588406 262 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AL022345.1-201ENST00000607292 135 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AC244205.2-202ENST00000635781 342 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DOAP06340 AL592437.2-201ENST00000421655 2434 ntBASIC3.94□□□□□ -1.78
HLA-DOAP06340 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DOAP06340 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HLA-DOAP06340 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.94□□□□□ -1.78
HLA-DOAP06340 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DOAP06340 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DOAP06340 AC018529.3-201ENST00000624212 2254 ntBASIC3.93□□□□□ -1.78
HLA-DOAP06340 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.93□□□□□ -1.78
HLA-DOAP06340 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms