Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LDB3O75112 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
LDB3O75112 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.17□□□□□ -1.9
LDB3O75112 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
LDB3O75112 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
LDB3O75112 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LDB3O75112 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
LDB3O75112 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LDB3O75112 DEFB108F-201ENST00000344638 222 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MIR30E-201ENST00000362104 92 ntBASIC3.16□□□□□ -1.9
LDB3O75112 RNA5SP295-201ENST00000362655 121 ntBASIC3.16□□□□□ -1.9
LDB3O75112 RNU6-552P-201ENST00000362869 119 ntBASIC3.16□□□□□ -1.9
LDB3O75112 Y_RNA.162-201ENST00000363683 102 ntBASIC3.16□□□□□ -1.9
LDB3O75112 RNU6-960P-201ENST00000364056 120 ntBASIC3.16□□□□□ -1.9
LDB3O75112 RNU6-188P-201ENST00000364207 107 ntBASIC3.16□□□□□ -1.9
LDB3O75112 Y_RNA.231-201ENST00000364358 102 ntBASIC3.16□□□□□ -1.9
LDB3O75112 RNU6-522P-201ENST00000364497 107 ntBASIC3.16□□□□□ -1.9
LDB3O75112 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LDB3O75112 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
LDB3O75112 RNU6-692P-201ENST00000384496 107 ntBASIC3.16□□□□□ -1.9
LDB3O75112 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
LDB3O75112 RNU6-903P-201ENST00000391270 109 ntBASIC3.16□□□□□ -1.9
LDB3O75112 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.16□□□□□ -1.9
LDB3O75112 MIR1302-11-201ENST00000408051 138 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MIR1302-9-201ENST00000408365 138 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MIR1302-10-201ENST00000408734 138 ntBASIC3.16□□□□□ -1.9
LDB3O75112 RNU2-39P-201ENST00000410604 198 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.16□□□□□ -1.9
LDB3O75112 AF228730.4-201ENST00000421457 183 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.16□□□□□ -1.9
LDB3O75112 RAC1P6-201ENST00000423911 575 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MTCO2P12-201ENST00000427426 682 ntBASIC3.16□□□□□ -1.9
LDB3O75112 RPL23AP82-202ENST00000427528 469 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC005534.2-201ENST00000431047 433 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.16□□□□□ -1.9
LDB3O75112 HMGB1P18-201ENST00000438801 619 ntBASIC3.16□□□□□ -1.9
LDB3O75112 PRDX3P3-201ENST00000447765 522 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL590639.1-201ENST00000456484 337 ntBASIC3.16□□□□□ -1.9
LDB3O75112 CENPBD1P1-201ENST00000464061 469 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MRPS17P3-201ENST00000465453 385 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.16□□□□□ -1.9
LDB3O75112 AC126389.1-201ENST00000477436 290 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC021205.2-201ENST00000480069 347 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC108860.1-201ENST00000484521 383 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.16□□□□□ -1.9
LDB3O75112 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.16□□□□□ -1.9
LDB3O75112 GMPSP1-201ENST00000514075 579 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.16□□□□□ -1.9
LDB3O75112 RNU6-840P-201ENST00000517275 65 ntBASIC3.16□□□□□ -1.9
LDB3O75112 OR5BN1P-201ENST00000532955 829 ntBASIC3.16□□□□□ -1.9
LDB3O75112 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.16□□□□□ -1.9
LDB3O75112 AC011602.1-201ENST00000546484 331 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC005476.1-201ENST00000554427 397 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.16□□□□□ -1.9
LDB3O75112 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MTCO3P13-201ENST00000577757 781 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MIR4775-201ENST00000581168 75 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.16□□□□□ -1.9
LDB3O75112 AL670379.6-201ENST00000603753 252 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL670379.11-201ENST00000604059 253 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL162713.1-201ENST00000604480 262 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AC008162.1-201ENST00000604718 254 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL670379.1-201ENST00000604752 252 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL670379.5-201ENST00000605253 252 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL670379.12-201ENST00000605291 253 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL670379.8-201ENST00000605353 252 ntBASIC3.16□□□□□ -1.9
LDB3O75112 AL670379.7-201ENST00000605823 252 ntBASIC3.16□□□□□ -1.9
LDB3O75112 MIR1302-2-201ENST00000607096 138 ntBASIC3.16□□□□□ -1.9
LDB3O75112 uc_338.5-201ENST00000611839 155 ntBASIC3.16□□□□□ -1.9
LDB3O75112 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
LDB3O75112 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
LDB3O75112 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
LDB3O75112 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LDB3O75112 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.16□□□□□ -1.9
LDB3O75112 PWAR6-201ENST00000552334 4618 ntBASIC3.15□□□□□ -1.9
LDB3O75112 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
LDB3O75112 SNORA63-201ENST00000363450 132 ntBASIC3.15□□□□□ -1.91
LDB3O75112 Y_RNA.167-201ENST00000363735 109 ntBASIC3.15□□□□□ -1.91
LDB3O75112 MIR454-201ENST00000390180 115 ntBASIC3.15□□□□□ -1.91
LDB3O75112 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
LDB3O75112 AL591034.1-201ENST00000407447 340 ntBASIC3.15□□□□□ -1.91
LDB3O75112 RNU4-14P-201ENST00000410858 122 ntBASIC3.15□□□□□ -1.91
LDB3O75112 RNU6-55P-201ENST00000411092 107 ntBASIC3.15□□□□□ -1.91
LDB3O75112 RNU6-954P-201ENST00000411355 107 ntBASIC3.15□□□□□ -1.91
LDB3O75112 AC114491.1-201ENST00000416095 246 ntBASIC3.15□□□□□ -1.91
LDB3O75112 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.15□□□□□ -1.91
LDB3O75112 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.15□□□□□ -1.91
LDB3O75112 AC097713.2-201ENST00000430199 356 ntBASIC3.15□□□□□ -1.91
LDB3O75112 DDX3P2-201ENST00000446138 111 ntBASIC3.15□□□□□ -1.91
LDB3O75112 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
LDB3O75112 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.15□□□□□ -1.91
LDB3O75112 PRSS3P4-201ENST00000453323 162 ntBASIC3.15□□□□□ -1.91
LDB3O75112 RPS23P3-201ENST00000470993 430 ntBASIC3.15□□□□□ -1.91
LDB3O75112 RN7SL432P-201ENST00000484057 298 ntBASIC3.15□□□□□ -1.91
LDB3O75112 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.15□□□□□ -1.91
LDB3O75112 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.15□□□□□ -1.91
LDB3O75112 APOOP4-201ENST00000513530 597 ntBASIC3.15□□□□□ -1.91
LDB3O75112 RNU4-29P-201ENST00000515943 174 ntBASIC3.15□□□□□ -1.91
LDB3O75112 Y_RNA.691-201ENST00000516611 103 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms