Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PPIAP15-201ENST00000479662 484 ntBASIC4.06□□□□□ -1.76
CBX4O00257 RPL21P13-201ENST00000488305 481 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 APOOP3-201ENST00000536787 586 ntBASIC4.06□□□□□ -1.76
CBX4O00257 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 OR1M4P-201ENST00000589199 287 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AC069200.1-201ENST00000609511 323 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AL121772.2-201ENST00000614331 297 ntBASIC4.06□□□□□ -1.76
CBX4O00257 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 AC099506.2-201ENST00000623074 221 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AL773545.4-201ENST00000637262 310 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AL513478.4-201ENST00000641636 310 ntBASIC4.06□□□□□ -1.76
CBX4O00257 ZNF962P-201ENST00000443465 3140 ntBASIC4.06□□□□□ -1.76
CBX4O00257 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.06□□□□□ -1.76
CBX4O00257 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 AL049641.1-201ENST00000441055 1948 ntBASIC4.05□□□□□ -1.76
CBX4O00257 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 NCAPGP1-201ENST00000505112 1814 ntBASIC4.05□□□□□ -1.76
CBX4O00257 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CBX4O00257 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 AC007685.1-201ENST00000329806 452 ntBASIC4.05□□□□□ -1.76
CBX4O00257 SNORA73.2-201ENST00000364946 201 ntBASIC4.05□□□□□ -1.76
CBX4O00257 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CBX4O00257 Y_RNA.394-201ENST00000383942 103 ntBASIC4.05□□□□□ -1.76
CBX4O00257 SNORD116-29-201ENST00000384516 83 ntBASIC4.05□□□□□ -1.76
CBX4O00257 Y_RNA.579-201ENST00000390939 94 ntBASIC4.05□□□□□ -1.76
CBX4O00257 U3.42-201ENST00000408746 214 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AL512844.2-201ENST00000433990 593 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AC092573.2-201ENST00000434546 243 ntBASIC4.05□□□□□ -1.76
CBX4O00257 RPL7P28-201ENST00000437739 740 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.05□□□□□ -1.76
CBX4O00257 AL133547.1-201ENST00000448546 220 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AC133473.1-201ENST00000455173 299 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 RPS23P3-201ENST00000470993 430 ntBASIC4.05□□□□□ -1.76
CBX4O00257 RN7SKP13-201ENST00000515933 244 ntBASIC4.05□□□□□ -1.76
CBX4O00257 RNU6-1016P-201ENST00000516689 94 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AC093249.1-201ENST00000567049 203 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.05□□□□□ -1.76
CBX4O00257 AC004805.2-201ENST00000605382 482 ntBASIC4.05□□□□□ -1.76
CBX4O00257 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CBX4O00257 AC133104.2-201ENST00000615272 193 ntBASIC4.05□□□□□ -1.76
CBX4O00257 MIR6128-201ENST00000615528 109 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AL591424.2-201ENST00000617023 128 ntBASIC4.05□□□□□ -1.76
CBX4O00257 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 AC048347.1-201ENST00000624621 427 ntBASIC4.05□□□□□ -1.76
CBX4O00257 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CBX4O00257 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
CBX4O00257 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.05□□□□□ -1.76
CBX4O00257 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CBX4O00257 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
CBX4O00257 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
CBX4O00257 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.04□□□□□ -1.76
CBX4O00257 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CBX4O00257 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.04□□□□□ -1.76
CBX4O00257 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.04□□□□□ -1.76
CBX4O00257 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CBX4O00257 RNU6-43P-201ENST00000384302 107 ntBASIC4.04□□□□□ -1.76
CBX4O00257 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.04□□□□□ -1.76
CBX4O00257 AL590004.1-201ENST00000405321 300 ntBASIC4.04□□□□□ -1.76
CBX4O00257 SNORA3C-201ENST00000408792 125 ntBASIC4.04□□□□□ -1.76
CBX4O00257 ATG3P1-201ENST00000419507 911 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AF228730.4-201ENST00000421457 183 ntBASIC4.04□□□□□ -1.76
CBX4O00257 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.04□□□□□ -1.76
CBX4O00257 TMEM167AP1-201ENST00000423409 219 ntBASIC4.04□□□□□ -1.76
CBX4O00257 RPL7P37-201ENST00000425095 738 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.04□□□□□ -1.76
CBX4O00257 SNRPEP9-201ENST00000436794 238 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AL118496.2-201ENST00000448300 230 ntBASIC4.04□□□□□ -1.76
CBX4O00257 NDUFB1P2-201ENST00000449477 176 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.04□□□□□ -1.76
CBX4O00257 AC011005.2-201ENST00000487324 359 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
CBX4O00257 HMGB3P15-201ENST00000507326 574 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC116337.1-201ENST00000509680 687 ntBASIC4.04□□□□□ -1.76
CBX4O00257 RNU1-86P-201ENST00000516108 154 ntBASIC4.04□□□□□ -1.76
CBX4O00257 RNU1-107P-201ENST00000516617 154 ntBASIC4.04□□□□□ -1.76
CBX4O00257 RNU6-1282P-201ENST00000516735 96 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC025755.1-201ENST00000521306 278 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC090281.1-201ENST00000523019 276 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.04□□□□□ -1.76
CBX4O00257 GNRHR2P1-201ENST00000555315 631 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.04□□□□□ -1.76
CBX4O00257 AC136601.2-201ENST00000604356 474 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC080078.3-201ENST00000605407 463 ntBASIC4.04□□□□□ -1.76
CBX4O00257 AC012603.1-201ENST00000606424 528 ntBASIC4.04□□□□□ -1.76
CBX4O00257 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.04□□□□□ -1.76
CBX4O00257 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 157.3 ms