Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC090582.1-201ENST00000636321 199 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3□□□□□ -1.93
CPSF3Q9UKF6 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3□□□□□ -1.93
CPSF3Q9UKF6 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 CR848007.1-201ENST00000442354 1699 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 RPL9P7-201ENST00000330965 580 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 HSPE1P11-201ENST00000339579 310 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 FTLP6-201ENST00000355274 422 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 RNU6-1167P-201ENST00000363227 94 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 Y_RNA.201-201ENST00000364052 96 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 MIR23A-201ENST00000385245 73 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 RPS3AP36-201ENST00000398190 775 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 RNA5SP21-201ENST00000410917 96 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 BMS1P22-201ENST00000414726 313 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 ELOCP4-201ENST00000420090 333 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 MTCO2P34-201ENST00000421994 607 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 ISCA1P6-201ENST00000427740 390 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 NEFMP1-201ENST00000443423 1006 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC244505.5-201ENST00000443639 207 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 DDX3P2-201ENST00000446138 111 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 ARL2BPP4-201ENST00000506854 471 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 RNA5SP356-201ENST00000515972 94 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AP000873.5-201ENST00000533906 236 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC006362.1-201ENST00000567392 174 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC137800.2-201ENST00000574375 120 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC098826.3-201ENST00000603823 466 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AL161798.1-201ENST00000604630 131 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC064872.1-201ENST00000604823 1072 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 RN7SKP299-201ENST00000606679 301 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AP002360.4-201ENST00000606980 481 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC010678.1-201ENST00000614118 713 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 AC009509.4-201ENST00000619202 509 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 FARSBP1-201ENST00000435808 1778 ntBASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CPSF3Q9UKF6 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC108206.1-201ENST00000570186 4159 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 Y_RNA.51-201ENST00000362725 102 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 RNU6-140P-201ENST00000384566 108 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 RNU2-8P-201ENST00000410727 190 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 RNA5SP492-201ENST00000411330 114 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC127391.1-201ENST00000411737 98 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 ZNF863P-201ENST00000426746 417 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC137499.1-201ENST00000427602 88 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 RN7SL499P-201ENST00000481141 276 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 RNU1-103P-201ENST00000516502 125 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 RNU7-51P-201ENST00000516560 62 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 RNA5SP290-201ENST00000517133 127 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 HMGB1P41-201ENST00000520234 440 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 SUB1P1-201ENST00000524415 382 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 MIR3913-1-201ENST00000577744 102 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 MIR3682-201ENST00000581338 84 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 MIR3605-201ENST00000583214 100 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AL035413.2-201ENST00000604801 525 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC080013.6-201ENST00000606185 215 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC098614.4-201ENST00000607601 462 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AL133173.2-201ENST00000614270 90 ntBASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.98□□□□□ -1.93
CPSF3Q9UKF6 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 UBE2L2-201ENST00000254302 429 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 Y_RNA.245-201ENST00000364493 95 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 SNORA20.2-201ENST00000383922 131 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 MIR9-1-201ENST00000385198 89 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC112220.1-201ENST00000434628 355 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AL353706.1-201ENST00000436728 494 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 MTND1P29-201ENST00000448112 647 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 MTND1P27-201ENST00000451117 902 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 RPL12P25-201ENST00000455592 494 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AL122001.1-201ENST00000457027 370 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC090525.1-201ENST00000479116 478 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC004924.1-201ENST00000480160 781 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AC138853.1-201ENST00000503549 823 ntBASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.97□□□□□ -1.93
CPSF3Q9UKF6 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 212 ms