Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.138-201ENST00000363462 102 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.187-201ENST00000363918 113 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.324-201ENST00000365165 102 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 MIR493-201ENST00000385254 89 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 RNU6-1197P-201ENST00000391183 107 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 Z98941.1-201ENST00000407764 100 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AL356535.1-201ENST00000440335 398 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AL163153.1-201ENST00000554223 283 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 MIR3690-201ENST00000580266 75 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AC005034.5-201ENST00000604219 466 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AL627309.6-201ENST00000606857 840 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 AL157817.1-201ENST00000614264 790 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 RMST_4.1-201ENST00000616886 107 ntBASIC4.69□□□□□ -1.66
DDX41Q9UJV9 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
DDX41Q9UJV9 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AC138393.1-203ENST00000327086 343 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 MIR423-201ENST00000362201 94 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 RNU6-1188P-201ENST00000363795 107 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 DEFB109C-201ENST00000382575 264 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 DEFB109B-201ENST00000382656 264 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 RNU2-68P-201ENST00000410878 191 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AC245054.2-201ENST00000415639 319 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 RBMY1KP-201ENST00000423480 476 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 HMGB1P9-201ENST00000429856 646 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AL645568.3-201ENST00000433683 316 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 MTCYBP6-201ENST00000441810 138 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 CECR9-201ENST00000453421 199 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 RPL30P15-201ENST00000457129 321 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 RPL21P13-201ENST00000488305 481 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AC116337.1-201ENST00000509680 687 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 HSPE1P5-201ENST00000561489 272 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 ZNF192P1-203ENST00000565888 810 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 RN7SL703P-201ENST00000578485 302 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 PART1_1.1-201ENST00000611761 217 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 MIR486-1-201ENST00000612171 68 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.68□□□□□ -1.66
DDX41Q9UJV9 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX41Q9UJV9 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 MTND5P10-201ENST00000603719 1809 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.162-201ENST00000363683 102 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.326-201ENST00000365176 113 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 RNU6-1106P-201ENST00000390845 107 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 MIR1179-201ENST00000408703 91 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 RNU2-3P-201ENST00000410144 191 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 RPL7P37-201ENST00000425095 738 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 AC006011.1-201ENST00000442758 349 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.639-201ENST00000458981 102 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 RNU7-152P-201ENST00000458982 64 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 RPL30P5-201ENST00000494923 336 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 AC005741.1-201ENST00000511094 432 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 RNA5SP143-201ENST00000516936 115 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.67□□□□□ -1.66
DDX41Q9UJV9 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.67□□□□□ -1.66
DDX41Q9UJV9 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms