Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RNU1-108P-201ENST00000362556 161 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RNU6-704P-201ENST00000364162 103 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.233-201ENST00000364407 101 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.304-201ENST00000365011 112 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 U3.15-201ENST00000365398 212 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.570-201ENST00000384750 101 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RPL26P27-201ENST00000414397 437 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RPL23AP95-201ENST00000426806 265 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 AL031659.1-201ENST00000447075 539 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RPL37P4-201ENST00000448908 268 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 SSXP4-201ENST00000451349 245 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RPS5P7-201ENST00000456664 608 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 snoU13.1-201ENST00000459157 104 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RPL21P104-201ENST00000464143 478 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RPS23P7-201ENST00000466210 444 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RPL26P26-201ENST00000480251 434 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 SNORA27.4-201ENST00000516650 95 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 MIR4284-201ENST00000578924 81 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 AC091042.1-201ENST00000579213 173 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 MIR3667-201ENST00000581025 74 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 AP001485.1-201ENST00000604799 199 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 AC022336.2-201ENST00000568966 2538 ntBASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 AC112198.2-201ENST00000426589 6996 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 MAPK10-328ENST00000641553 4009 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 RNA5SP361-201ENST00000362686 118 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 RNU6-626P-201ENST00000363354 107 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.136-201ENST00000363444 102 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 RNU5F-3P-201ENST00000363767 117 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 SNORA7.2-201ENST00000364446 145 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 MIR518D-201ENST00000385014 87 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 RPL23AP36-201ENST00000413895 458 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 NUTF2P3-201ENST00000448540 384 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AL451050.1-201ENST00000450126 415 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AP001324.2-201ENST00000461163 319 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 RN7SL319P-201ENST00000480656 221 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 RNU6-1282P-201ENST00000516735 96 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AL139124.1-201ENST00000609123 421 ntBASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.35□□□□□ -1.55
LIMD1Q9UGP4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AL136964.1-201ENST00000622038 2990 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RNU6-942P-201ENST00000363002 107 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RNU5B-2P-201ENST00000363036 113 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC068538.1-201ENST00000376856 336 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RNU6-281P-201ENST00000384212 103 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RNU6-658P-201ENST00000384606 106 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 MIR10B-201ENST00000385011 110 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RPL23AP14-201ENST00000468281 468 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RPL30P5-201ENST00000494923 336 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC091959.1-201ENST00000495857 238 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC093840.1-201ENST00000511599 336 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RNU1-103P-201ENST00000516502 125 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RNU6-567P-201ENST00000516746 107 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AP005660.1-201ENST00000522972 293 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 MIR5695-201ENST00000579717 85 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC008749.1-201ENST00000597650 306 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC011921.3-201ENST00000605540 361 ntBASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 874.4 ms