Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RNU6-946P-201ENST00000383878 107 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RNA5SP424-201ENST00000390988 115 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC110754.1-201ENST00000399740 601 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 MIR1302-11-201ENST00000408051 138 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 MIR1302-9-201ENST00000408365 138 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 MIR1302-10-201ENST00000408734 138 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 NDUFB4P5-201ENST00000415445 361 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 USP9YP20-201ENST00000419224 558 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RPS15AP6-201ENST00000420703 385 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 PPP1R11P2-201ENST00000423543 382 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RPL7L1P10-201ENST00000427790 463 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 HIGD1AP11-201ENST00000438361 280 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.654-201ENST00000497848 106 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC117522.3-201ENST00000507974 584 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RNU6-1153P-201ENST00000516760 105 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC007991.1-201ENST00000522680 631 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 OR4H12P-201ENST00000556269 907 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AL118558.2-201ENST00000556294 238 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC026464.5-201ENST00000562497 722 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 MIR4474-201ENST00000579189 78 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC011471.1-201ENST00000585766 187 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC006116.10-201ENST00000591836 581 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC005034.5-201ENST00000604219 466 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 MIR1302-2-201ENST00000607096 138 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC004696.1-201ENST00000614345 607 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 AC007998.5-201ENST00000622938 237 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 SCARNA15.3-201ENST00000626315 122 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 SCARNA4.1-201ENST00000628597 123 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RNU6-1287P-201ENST00000362914 107 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RNU1-18P-201ENST00000363062 164 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.301-201ENST00000364990 103 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.373-201ENST00000365600 103 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RNU6-1060P-201ENST00000384664 107 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RPL21P17-201ENST00000397467 475 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AC005534.2-201ENST00000431047 433 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RN7SL93P-201ENST00000463035 293 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 MTCO1P29-201ENST00000496868 288 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RN7SKP13-201ENST00000515933 244 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RNU1-95P-201ENST00000516357 160 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 RNU1-128P-201ENST00000516704 160 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AC126177.3-201ENST00000551839 688 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AL121576.1-201ENST00000556055 276 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AC008521.1-201ENST00000587471 187 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AF038458.1-201ENST00000588406 262 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 AC092807.2-201ENST00000609367 243 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 MFSD8-236ENST00000641509 4050 ntBASIC3.76□□□□□ -1.81
DKK3Q9UBP4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
DKK3Q9UBP4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.75□□□□□ -1.81
DKK3Q9UBP4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
DKK3Q9UBP4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.75□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.58-201ENST00000362807 102 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.67-201ENST00000362870 100 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.154-201ENST00000363624 102 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 RNY3P1-201ENST00000365085 102 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 RNY3-201ENST00000365484 102 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.414-201ENST00000384011 101 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 RNU6-1013P-201ENST00000384180 107 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.490-201ENST00000384413 102 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 RNU6-550P-201ENST00000391057 101 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 AL354751.2-201ENST00000415471 210 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.75□□□□□ -1.81
DKK3Q9UBP4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.75□□□□□ -1.81
DKK3Q9UBP4 AL118496.2-201ENST00000448300 230 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.75□□□□□ -1.81
DKK3Q9UBP4 PPP1R2P5-201ENST00000457256 603 ntBASIC3.75□□□□□ -1.81
DKK3Q9UBP4 RNU7-66P-201ENST00000459469 62 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms