Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 AC019235.1-201ENST00000503847 207 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 FCF1P8-201ENST00000510322 597 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 RNU6-685P-201ENST00000517088 95 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AP003033.1-201ENST00000527244 415 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC104383.1-201ENST00000530297 370 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC007621.1-201ENST00000604544 437 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AL160281.1-201ENST00000605307 311 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 DUSP12P1-201ENST00000612874 516 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 MIR7975-201ENST00000619350 68 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC233263.6-201ENST00000631132 1963 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AL513302.2-201ENST00000562313 1842 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC058791.1-201ENST00000608412 3198 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 RNU1-33P-201ENST00000364249 162 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 SNORA9-201ENST00000384215 133 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 RNU6-517P-201ENST00000384362 110 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.599-201ENST00000410489 109 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 RNU6-1025P-201ENST00000410629 104 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 RPS3AP12-201ENST00000443616 753 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 RPL26P9-201ENST00000457466 433 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AP002884.2-201ENST00000471647 395 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 RPS29P20-201ENST00000489592 171 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC098591.2-201ENST00000510152 315 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.693-201ENST00000516641 110 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 SNORA70.19-201ENST00000516717 90 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AP003122.3-201ENST00000526316 255 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC084851.1-201ENST00000529105 249 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 ZNF519P2-201ENST00000557032 169 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AL157871.3-201ENST00000557231 293 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 HMGB1P33-201ENST00000563485 527 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC037471.2-201ENST00000564941 598 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 TPRKBP2-201ENST00000565969 475 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC025678.1-201ENST00000567861 338 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 MIR1273C-201ENST00000578669 77 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC012468.1-201ENST00000604888 430 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 AC093788.1-201ENST00000609356 927 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 U6.99-201ENST00000637524 83 ntBASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
HCN3Q9P1Z3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 Y_RNA.33-201ENST00000362591 102 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 SNORA14A-201ENST00000364773 135 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 RNU4-12P-201ENST00000365233 139 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 RNVU1-14-201ENST00000384770 164 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 SNORD37.1-201ENST00000390968 65 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 MIR888-201ENST00000401186 77 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 MIR548F1-201ENST00000408667 84 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 RNU6-55P-201ENST00000411092 107 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 RNU6-954P-201ENST00000411355 107 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 FCF1P9-201ENST00000412546 282 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AP000907.1-201ENST00000428428 510 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AL158071.1-201ENST00000430315 461 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AL118520.1-201ENST00000450770 291 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 RPS27P29-201ENST00000463110 252 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AC010401.1-201ENST00000463867 348 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 GMFBP1-201ENST00000467831 427 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 RN7SL442P-201ENST00000473804 320 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 TRBV1-201ENST00000476502 284 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AL163973.1-201ENST00000484753 577 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AC093663.1-201ENST00000497190 394 ntBASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.21□□□□□ -1.9
HCN3Q9P1Z3 AC074250.1-201ENST00000511117 192 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms