Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 COX6CP14-201ENST00000469580 174 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AC091860.1-201ENST00000505723 432 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 SNORA48.9-201ENST00000516419 162 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 DUXAP1-201ENST00000556632 463 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AL133241.1-201ENST00000556832 487 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 HSPE1P3-201ENST00000559254 309 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 MIR3198-2-201ENST00000577868 80 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AC080078.3-201ENST00000605407 463 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AC110491.1-201ENST00000562191 2010 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 U3.13-201ENST00000364804 214 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 MIR147B-201ENST00000390185 80 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 FGF7P8-201ENST00000402994 292 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 SFR1P2-201ENST00000421841 730 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 VN1R10P-201ENST00000447106 875 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 RPL26P9-201ENST00000457466 433 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 SNORA31.24-201ENST00000517232 57 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 SNORD14A-201ENST00000606526 91 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AL355802.4-201ENST00000607635 548 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AC106052.1-201ENST00000608029 497 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 LINC02211-204ENST00000642024 1070 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 RNU6-115P-201ENST00000364310 107 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 Y_RNA.269-201ENST00000364685 89 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AC096649.2-201ENST00000416186 393 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AIMP1P2-201ENST00000425294 312 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 RPS3AP44-201ENST00000425466 790 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AL590233.1-201ENST00000430017 456 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AC098831.1-201ENST00000440661 216 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 OFD1P3Y-201ENST00000453312 783 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 RFC5P1-201ENST00000454419 874 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 RPS20P20-201ENST00000460498 340 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 HMGB3P17-201ENST00000504195 649 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 RNU6-1053P-201ENST00000515930 101 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 RNU6-928P-201ENST00000516876 104 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AL731537.2-201ENST00000561565 951 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 LINC00557-201ENST00000563184 1279 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AP001269.3-201ENST00000588718 329 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AC008749.1-201ENST00000597650 306 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AL096840.1-201ENST00000603287 93 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AL158211.4-201ENST00000606988 584 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AC027514.1-201ENST00000588561 1603 ntBASIC1.24□□□□□ -2.21
SCN3AQ9NY46 AC007785.2-201ENST00000598627 1916 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AL391987.6-201ENST00000305671 199 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC007742.1-201ENST00000425789 329 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC092634.2-201ENST00000428146 1010 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 MTCYBP15-201ENST00000433123 1127 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 ELOCP26-201ENST00000436067 329 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AL121601.2-201ENST00000438019 707 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 RPL23AP3-201ENST00000453844 468 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 LTV1P1-201ENST00000510683 1237 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 TRMT112P2-201ENST00000512910 132 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC019176.1-201ENST00000518519 225 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AP005639.2-201ENST00000527592 928 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AL355297.2-201ENST00000604792 129 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC243773.3-201ENST00000613270 256 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC005832.2-201ENST00000538921 1430 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 RNU6-883P-201ENST00000384597 107 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 MIR135A2-201ENST00000384854 100 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 MIR7-2-201ENST00000384970 110 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 U6atac.2-201ENST00000408644 118 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 RPS24P7-201ENST00000416921 246 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 BPY2DP-201ENST00000422208 265 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC092473.1-201ENST00000441098 221 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC092902.1-201ENST00000486999 259 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC118282.2-201ENST00000508739 374 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 RNU6-528P-201ENST00000516926 100 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 SNORA76.2-201ENST00000517095 137 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AP005597.4-201ENST00000526762 229 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 BBIP1P1-201ENST00000602999 279 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 OR4H6P-202ENST00000603819 340 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 AL021997.1-201ENST00000605757 193 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms