Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC103810.1-201ENST00000579873 453 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC090616.3-201ENST00000582184 217 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 MIR548AB-201ENST00000584917 84 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC009977.1-201ENST00000586015 570 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC174048.1-201ENST00000603389 144 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 OR2AS2P-201ENST00000606902 342 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC093732.2-201ENST00000607950 274 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC010297.1-201ENST00000623948 149 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC025048.6-202ENST00000627667 438 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 CR848007.1-201ENST00000442354 1699 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AF228730.1-201ENST00000397972 663 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC023141.4-201ENST00000412031 328 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RPS12P24-201ENST00000412619 387 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RPL26P27-201ENST00000414397 437 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 SKA2P1-201ENST00000425592 390 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RPL36AP53-201ENST00000432891 316 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 PGBD4P3-201ENST00000440731 581 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 MTND3P7-201ENST00000474435 343 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RPL31P41-201ENST00000477967 372 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC126182.1-201ENST00000478134 357 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 BET1P1-201ENST00000482276 359 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 MTND1P3-201ENST00000484956 952 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC096576.1-201ENST00000489014 359 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RPS27AP10-201ENST00000496103 208 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC113155.1-201ENST00000511141 769 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC118465.1-201ENST00000513820 1271 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RNU7-51P-201ENST00000516560 62 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RN7SKP272-201ENST00000516988 232 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 OR4R1P-201ENST00000529879 463 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC007834.2-201ENST00000536310 343 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 BNIP3P8-201ENST00000597863 560 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 BNIP3P9-201ENST00000603714 553 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC078883.4-201ENST00000623218 367 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 FO624990.1-201ENST00000636373 85 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 MTND5P42-201ENST00000637720 498 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.61□□□□□ -1.99
DDX28Q9NUL7 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
DDX28Q9NUL7 AC000403.1-201ENST00000613696 3585 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 SNORD56.2-201ENST00000363242 71 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 RNU6-288P-201ENST00000363690 104 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 DEFA7P-201ENST00000382676 285 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 SNORA26.8-201ENST00000391306 124 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 RPL23AP32-201ENST00000395315 459 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC098614.2-201ENST00000426040 255 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 SUMO1P4-201ENST00000429430 302 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 RPS15AP5-201ENST00000436276 388 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 RPS29P6-201ENST00000438196 145 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC098831.1-201ENST00000440661 216 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC026801.1-201ENST00000497178 464 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 RPL37P25-201ENST00000507308 276 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 RNA5SP367-201ENST00000516557 118 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 PSMA2P1-201ENST00000526365 646 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC010546.1-201ENST00000569391 485 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AL355877.2-201ENST00000603670 358 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AL355598.1-201ENST00000604169 202 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AP002360.4-201ENST00000606980 481 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AC013562.2-201ENST00000611632 603 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 AL603839.4-201ENST00000624658 1005 ntBASIC2.6□□□□□ -1.99
DDX28Q9NUL7 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
DDX28Q9NUL7 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC110491.1-201ENST00000562191 2010 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 ELF2P3-201ENST00000445099 1506 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC073343.1-201ENST00000328239 651 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms